Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi377g00002 ATGAAGAGATCGGTGCGGCAGACTAAGTCAAGGCAGAAACCCAAAACAAAGCAAAAAAAGAACAAACAAAGGATTGATGCTAAGAAGCCAAAGAAACCTCCTACTGCCTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGCGGAGAGAAATGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCAACAGAAAAACGTGCAGAATTCGATAGAGCAATGGCAGAATATAACAAGAAAATGGAAAGCGGTGAATATGAAGAAACTGATGAGGAATCAGAGTTTGGTGAGTAA 357 0.3894 MKRSVRQTKSRQKPKTKQKKNKQRIDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMAEYNKKMESGEYEETDEESEFGE 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi377g00002 118 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 30 99 IPR009071 -
Sebi377g00002 118 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 7 114 IPR031061 -
Sebi377g00002 118 SMART hmgende2 29 100 IPR009071 -
Sebi377g00002 118 MobiDBLite consensus disorder prediction 1 27 - -
Sebi377g00002 118 Gene3D High mobility group box domain 24 114 IPR036910 -
Sebi377g00002 118 MobiDBLite consensus disorder prediction 1 34 - -
Sebi377g00002 118 Pfam HMG (high mobility group) box 30 99 IPR009071 -
Sebi377g00002 118 SUPERFAMILY HMG-box 16 108 IPR036910 -
Sebi377g00002 118 CDD HMG-box_AtHMGB1-like 31 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi377g00002 Sebi-Chr377 24642 27786 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Sebi377g00002 HMG_box 4.7e-19 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi377g00002 - - gmx:100809401 176.407