Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi377g00001 ATGGAGGAGTGTAAAAAGAGCAAAGGAAAACAAAAGATAGAGATTAAAGAGATCAAGGAAAGCAAAAATCTTTACAATACTTTTGTAAAGCGAAAATCTGGCATTTTCAAGAAGGCCAGTGAATTATCAACACTTTGTGGGGCTAGGGTTGATATACTCATGTTTTCGCCATGTGGAAGACCATTCTGTTATGGGAACCCTTCTCTTCAGTCGATGACAAGGACTGGTTTAGATGAAGGAAACCCTTTAGAAGGTGGTAACGATGATCAGCTTGTAGAGGATTCCGAGAGACCGGAGATCAAAGAACTCAATGAAAAAAATGATGCACTCTTTGATCAATTATATGTGGAGAAAGCAGGAGAGAAAAAACTAAAGGGGATTTTGAAGAATATGGATAGCAATGATTGGTGGGAGGCCGAACTGCAAGATTTTAACTATCATAAGGATGCCAAAGCAATGGAGGAATCTTTGACGGAACTCCGAAACAAATTAACAAATGAACTTTCAATCAAAGAAAATACTTCTAATGGTAAGGGCTCTTCAACTTAA 549 0.3789 MEECKKSKGKQKIEIKEIKESKNLYNTFVKRKSGIFKKASELSTLCGARVDILMFSPCGRPFCYGNPSLQSMTRTGLDEGNPLEGGNDDQLVEDSERPEIKELNEKNDALFDQLYVEKAGEKKLKGILKNMDSNDWWEAELQDFNYHKDAKAMEESLTELRNKLTNELSIKENTSNGKGSST 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi377g00001 182 Gene3D - 21 83 IPR036879 GO:0003677|GO:0046983
Sebi377g00001 182 PANTHER MADS BOX PROTEIN 10 166 - -
Sebi377g00001 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 64 IPR002100 GO:0003677|GO:0046983
Sebi377g00001 182 Coils Coil 147 167 - -
Sebi377g00001 182 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Sebi377g00001 182 SUPERFAMILY SRF-like 9 73 IPR036879 GO:0003677|GO:0046983
Sebi377g00001 182 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Sebi377g00001 182 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Sebi377g00001 182 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Sebi377g00001 182 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi377g00001 Sebi-Chr377 2571 3119 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi377g00001 5 169 Type I MADS-box Gene Family AT1G28460 33.533 3.80e-25 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi377g00001 SRF-TF 9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi377g00001 - K12412 gmx:102665718 148.288