Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi376g00055 ATGTCCATTTCCCTCGCAACCACCATGGATTTCGCCTTCCTCGCTTTTCTCTTCCCGTCCCTCTGGGAGATCGAAGTCGCGTTCGCCGCCTCCGTCTTCGTCATCCTCGCCTATCGGTTCTTCACCTTCAGAACCGGCGACCTCAACGCCGATCGATCGCTTCTTGACAATTCCACCGCCACCGACGCTGCCGACGACAAGGAGAAGATCGCCTTGAAAGGAGATTCTCAAGCCAGTTCAGCGTACCTGATTAAGTTAGAACTATTGGCTGCTAAAAATCTCATTGCTGCAAACTTAAATGGCACATCGGATCCTTATGCTATCATCACATGTGGCAATGAAAAACGATTCAGTTCCATGGTCCCTGGTTCAAGAAATCCTATGTGGGGCGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTCAAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCCGTGACTGTTCCAGTTGAAAGTGAAGGTCAAACTGGTGCAGTGTGGCATACTTTGGATAGCCCATCAGGGCAGGTTTGTCTTCATATAAAAACAAGAAAACTATCTGCAAATACCTCCAGAATGAATGGTTATGGCGGAGCCAACACTCGAAGAAGGATGCCCTTGGAAAAACAGGGGCCTACTGTAGTTCATCAAAAGGCAGGGCCTCTTCAAACAATATTTGATCTTCATCCAGACGAGGTTGTTGATCATAGTTATTCTTGTGCACTTGAGAGGTCATTCTTGTATCATGGTCGAATGTATGTCTCAGCATGGCACATTTGTTTCCATTCCAATGTGTTCTCAAAGCAAATGAAGGTCGTTATTCCATTTGAAGATATAGATGAGATTCGAAGGAGTCAACATGCATTTATTAATCCTGCTATAACAATTATTCTTCGTATGGGTGCTGGTGGACATGGTGTCCCTCCTTTGGGAAGTCCTGATGGCAGAGTCAGATATAAGTTTGCATCATTTTGGAACAGGAATCATGCATTGAGAAATCTACAACGTACAGCAAATAATTTCCATAAAATGTTGGAATCTGAGAAGAAGGAAAGTGCAGAGTCCGAACTGCGTGCACATAGCAGTTCTGTCAGAAGAAGTGATATACTGGATAAAGTTCCTGAAGCTAGCATGCCAAAAACCGGAAAACTTCAACCTTTTATCAAAGAGGAGGCTTTAGTTGGTATATACAATGATGTTTTTCCCTGCACAGCTGAGCAGTTTTTTAACTTATTATTAAATGACGATTCAAAATTTACTAGCAAATATCGTTCAATACGAAAGGATACGAATCTTGTGATGGGACAGTGGCATACAGCAGAAGAATATGATGGTCAAGTTCGAGAGATAACCTTCAGATCCCTTTGTAACAGCCCCATGTGCCCTCCAGACACAGCCATGACAGAGTGGCAACATCATGTTCTATCACCAGACAAGAAAAACCTG 1476 0.4309 MSISLATTMDFAFLAFLFPSLWEIEVAFAASVFVILAYRFFTFRTGDLNADRSLLDNSTATDAADDKEKIALKGDSQASSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVKINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLHIKTRKLSANTSRMNGYGGANTRRRMPLEKQGPTVVHQKAGPLQTIFDLHPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRNLQRTANNFHKMLESEKKESAESELRAHSSSVRRSDILDKVPEASMPKTGKLQPFIKEEALVGIYNDVFPCTAEQFFNLLLNDDSKFTSKYRSIRKDTNLVMGQWHTAEEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSPDKKNL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi376g00055 492 CDD C2 84 180 - -
Sebi376g00055 492 ProSiteProfiles C2 domain profile. 64 180 IPR000008 -
Sebi376g00055 492 Pfam GRAM domain 233 301 IPR004182 -
Sebi376g00055 492 FunFam BAG-associated GRAM protein 1 isoform X2 231 350 - -
Sebi376g00055 492 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 81 192 IPR035892 -
Sebi376g00055 492 Gene3D - 230 350 IPR011993 -
Sebi376g00055 492 ProSiteProfiles VASt domain profile. 402 492 IPR031968 -
Sebi376g00055 492 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 11 492 IPR044655 -
Sebi376g00055 492 SMART gram2001c 230 296 IPR004182 -
Sebi376g00055 492 Pfam C2 domain 85 179 IPR000008 -
Sebi376g00055 492 Coils Coil 341 361 - -
Sebi376g00055 492 PRINTS C2 domain signature 99 111 IPR000008 -
Sebi376g00055 492 PRINTS C2 domain signature 123 136 IPR000008 -
Sebi376g00055 492 PRINTS C2 domain signature 144 152 IPR000008 -
Sebi376g00055 492 SMART C2_3c 83 179 IPR000008 -
Sebi376g00055 492 Pfam VAD1 Analog of StAR-related lipid transfer domain 406 485 IPR031968 -
Sebi376g00055 492 Gene3D C2 domain 65 197 IPR035892 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi376g00055 83 168 C2H2 Transcription Factor Family AT4G21160 25.581 1.37e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi376g00055 - - tpra:123924252 857.055