Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi376g00025 ATGTCTATGACTCCATCCGAGAGCGAAAGCAAGAAGAAGAAGCATCGCAGTCGCAAACATGAAGAAAGTGAAGGACAAGAAGAAGCCAAGGAGCAGCAGAAAGAGGACCTCTTCATGATCAAAACCTCAGAAGTTTACAACCCCAATCGACACCCTCCCAATGGCCCATTCTCCTCAAAAACTACGAGCGCCTCAACGTACGCACTGGACACTACACCCCTCTCCCCTCCGGTTACTCCCCTCTCAAACGCCCACTCACTGAGTACCTCAAGTACGGTGTCCTCAACCTTGACAAGCCCGCTAACCCTTCTTCCCATGAGCCACCCGCTTGGTCAAGTCCCAACGGGTGCTGGCAAAGAGTACGTTTGTGTTGCTCGCTTGCACTCCTCTGTCCCTGATGTCTCCAAGGTTGCTCGCGCCCTCGAGACCCTCACCGGTGCCGTGTTTCAACGGCCACCGTTGATTTCCGCCGTCAAGCGCCAGCTCAGGATCAGGACCATCTATGAAAGACCATGTGTGTTTCATTTGGGTTTGGTGCTTGGTGTGGGTGGCCACATGCAGGAGCTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAGGATAACATGGTCTCTATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTACCGGGATGAGACTTATTTGAGGAGGGTTGTCATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGATTGGTTGTCAAGGATTCTGCTGTCAATGCCATTTGTTATGGTGCCAAGTTGATGATTCCTGGCTTGCTCAGGTTTGAGAATGATATTGAGGTAGGGGAGGAGGTTGTGCTTATGACCACCAAGATCAAGAGGGTGGTCATGGATAGGGATACCTATCCCAGGAAATGGGGTTTGGGGCCCCAGGGCTTCCATGAAGAAGAAATGATTGCTGAAGGGAAGCTGGATAAGCATGGCAAGCCAAATGAGAAAACTCCCCAAGAGTGGCTGAGGGAATCTGTGGGTGAGAAGGATGCAGATGGGGAAGGGCGTAAAAGAAAGAAACACGAAAGTACTGATAGCCCTGTCTCCCTTCCTGCTAAGAAGGCGAAAGTTGAAGTTGAAGTGGTCGAGAAGCAGGAAACAGTGAAGCTGAAGAAAGTAAATGATGAAGCTGTGGAGGTTGAAGTTGAGAAGAAGGAGAAGAAGAAGAAAAAGAAGAAGGATAAAGAAAATGGTGAAGTTGCATCTTCAGATGAGGAGAAAGCTGAAAAGAAGAAGAAGAAGCATAAGGAAAAGGTTGAAGAGGGTTCTCCAGAGTTAGACAAATCTGAGAAGAAAAAGAAGAAGAAGACAAAGACACTGAAGATAATGCTGCTGAAATTAGTAACGGAAAGGATGACAATAAAGCGGATAGGAGTGAAAAGAAGCATAAGAAAAAGAAAAACAAAGATGCCAAGGAAGAATAGATTAAGGCATAATTTTGTTTTGTTGGATGGACTCATTATGTAA 1491 0.4661 MSMTPSESESKKKKHRSRKHEESEGQEEAKEQQKEDLFMIKTSEVYNPNRHPPNGPFSSKTTSASTYALDTTPLSPPVTPLSNAHSLSTSSTVSSTLTSPLTLLPMSHPLGQVPTGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYERPCVFHLGLVLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKIKRVVMDRDTYPRKWGLGPQGFHEEEMIAEGKLDKHGKPNEKTPQEWLRESVGEKDADGEGRKRKKHESTDSPVSLPAKKAKVEVEVVEKQETVKLKKVNDEAVEVEVEKKEKKKKKKKDKENGEVASSDEEKAEKKKKKHKEKVEEGSPELDKSEKKKKKKTKTLKIMLLKLVTERMTIKRIGVKRSIRKRKTKMPRKNRLRHNFVLLDGLIM 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi376g00025 496 Coils Coil 378 405 - -
Sebi376g00025 496 MobiDBLite consensus disorder prediction 388 444 - -
Sebi376g00025 496 CDD PUA_Cbf5 238 282 - -
Sebi376g00025 496 Gene3D Pseudouridine synthase 110 172 - -
Sebi376g00025 496 Gene3D Pseudouridine synthase 173 228 - -
Sebi376g00025 496 MobiDBLite consensus disorder prediction 1 93 - -
Sebi376g00025 496 ProSiteProfiles PUA domain profile. 239 282 - -
Sebi376g00025 496 MobiDBLite consensus disorder prediction 312 365 - -
Sebi376g00025 496 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 115 170 IPR004802 GO:0006396
Sebi376g00025 496 MobiDBLite consensus disorder prediction 312 355 - -
Sebi376g00025 496 Gene3D PUA domain 283 333 IPR036974 GO:0003723
Sebi376g00025 496 MobiDBLite consensus disorder prediction 19 38 - -
Sebi376g00025 496 MobiDBLite consensus disorder prediction 47 93 - -
Sebi376g00025 496 Gene3D PUA domain 229 282 IPR036974 GO:0003723
Sebi376g00025 496 SMART pua_5 240 323 IPR002478 GO:0003723
Sebi376g00025 496 SUPERFAMILY PUA domain-like 239 282 IPR015947 -
Sebi376g00025 496 Pfam PUA domain 240 287 IPR002478 GO:0003723
Sebi376g00025 496 SUPERFAMILY Pseudouridine synthase 115 237 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Sebi376g00025 496 MobiDBLite consensus disorder prediction 388 440 - -
Sebi376g00025 496 Pfam tRNA pseudouridylate synthase B C-terminal domain 173 236 IPR032819 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi376g00025 Sebi-Chr376 507249 509083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi376g00025 116 364 NAC Transcription Factor Family AT3G57150 60.559 3.29e-119 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi376g00025 K11131 - gmx:100806355 434.876