Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi376g00017 ATGCAATCAACATATCTCAATTTCCAGAAGGGTTCCTCTTCAGCACAAGTACTTCAGCTTACCAGATTAGCTACATGGACTTCTGCGCCTTCTGTTCCTTTCCTTTGCAAAACTGTCAAAGGAACATTTGGATATTTGGCTCCTGAATATTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTTGGAGTGGTTTTATTGGAACTCATTACTGGTCGGAAGCCAATTGAAGCGAGAAGGTCTCCCGGAGAGGAGAACTTGGTCTTATGGGTGAGTTAA 288 0.4167 MQSTYLNFQKGSSSAQVLQLTRLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEARRSPGEENLVLWVS 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi376g00017 95 ProSiteProfiles Protein kinase domain profile. 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi376g00017 95 Pfam Protein kinase domain 36 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi376g00017 95 Gene3D Transferase(Phosphotransferase) domain 1 13 95 - -
Sebi376g00017 95 SUPERFAMILY Protein kinase-like (PK-like) 25 82 IPR011009 -
Sebi376g00017 95 PANTHER OS08G0249100 PROTEIN 23 94 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi376g00017 Sebi-Chr376 387447 388273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi376g00017 39 94 Trihelix Transcription Factor Family AT1G70460 66.071 1.47e-20 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sebi376g00017 Pkinase 2.2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi376g00017 - - twl:119995202 147.902