Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi376g00015 ATGGATGACGGGTTGATGGCGGTCATGGCAAATGGGTGGTCGCAGTTTGAAAGTTTATGGGCGGTGGTGGAGTGGGATATTTTGTGTTCTGAACAAGAAAACAAACTAGCCACCGACAATAACATATATTATTATGATGACATAGTATTGGTCAGCTGCAAGAAGAACCTTCCTAGTTCATTTCCTTATGCAAGTGGAGCCACGGAGAGGCCTTATTCTTATGTTCTGCCACGGTATGCAAAGGTATCTGATGTGGGTGAGTCATGTAGTGTGGACTTGATGATAAGGGTGTTGCCTTGGGGACCAGTGACATGCAATAAGAACCGCTCTTATCCAGAGATACAGAGTGAGGAGGTGAATGGGATTCTGCTTAAATGGCGAGCCAACCGTTGTGGGGAGTGGGATGGTGGGGATGGAAGTTGCTTCTTGGACAACACCACCAACATGGTCTTCTGCAATTCCAAAGCAGGGATTTTGGCAAACTTTCTTGGAGAAGGGCTCAATGCTGGAGTTATGATCATCCCAATTTATAGCTTATTCTCATGGTTTGCATTAAGAACTGTACTCGGTCCCCCATTTGTGGTTGCATTCTTGATTTATAAATGGAAAAGGAGGGATCAATCTGCGTGTGATGAAGTTGAGGATTTCCTCCAAAATCATAGCAATTTGATACCTATCAAGTACTCTTACTCTGACATAAAGAAAATGACCAAAGGTTTCAAGCACAAGCTAGGTGAAGGAGGCTATGGTTATGTCTATAAAGGGAAGCTTCGAAGTAAACGTGATGTTGCTGTGAAATTATTATGCAAATCCAAACCAAATGAACAACAATTCATTAATGAAGTTGCCACTATTGGGAAAATTCGTCACACCAATGTGGGGAATAATATGTCCATAAGCTATGAGAAAATCTTTAATATCTCTCTTGGGGTGGCTCATGGAATCCAATACTTACATGAAGGTTGTGATATGCATATTCTACATTTTGATATCAAACCTCACAACATTCTTCTTGATGAGAATTTTAATCCAAAGATCTCTGATTTTGGATTGGCAAAGTTATATCCAATAGATGATGATAGCATTGTATCTCTAACAGTGGCAAGAGGAACAATGGGATACATGGCACCTGAATTGCTATACAAAAATATTGGAGGTGTTTCATACAAAGCTGATGTTTATAGCTTTGGGATGTTATTGATGGAAATGGCAGGTAGAAGGAAGAACTTAAATGCTATGGAGTATTCTTGGCAGACTTATTTTTCTAAATGGGTTTATGATCAATTTGAGGAAACTATAGATTTGGGTAATGCCACAGAAGAGGAAAAGGTGATAGCAAAGAAGATGATAATTATAGGTTTACATTGCATACAAATGAACCCAAATGATCGTCCTTCAATGAATGAGGTAATAAAGATGCTTGAAGGAGAATCTGAGTTCCAAGATGTTCTTCCACCCGAACCTCTGTTTGCAAGGGAAGCCAATAGATGA 1491 0.3984 MDDGLMAVMANGWSQFESLWAVVEWDILCSEQENKLATDNNIYYYDDIVLVSCKKNLPSSFPYASGATERPYSYVLPRYAKVSDVGESCSVDLMIRVLPWGPVTCNKNRSYPEIQSEEVNGILLKWRANRCGEWDGGDGSCFLDNTTNMVFCNSKAGILANFLGEGLNAGVMIIPIYSLFSWFALRTVLGPPFVVAFLIYKWKRRDQSACDEVEDFLQNHSNLIPIKYSYSDIKKMTKGFKHKLGEGGYGYVYKGKLRSKRDVAVKLLCKSKPNEQQFINEVATIGKIRHTNVGNNMSISYEKIFNISLGVAHGIQYLHEGCDMHILHFDIKPHNILLDENFNPKISDFGLAKLYPIDDDSIVSLTVARGTMGYMAPELLYKNIGGVSYKADVYSFGMLLMEMAGRRKNLNAMEYSWQTYFSKWVYDQFEETIDLGNATEEEKVIAKKMIIIGLHCIQMNPNDRPSMNEVIKMLEGESEFQDVLPPEPLFAREANR 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi376g00015 496 SMART serkin_6 238 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi376g00015 496 FunFam PR5-like receptor kinase 284 485 - -
Sebi376g00015 496 PANTHER RUST RESISTANCE KINASE LR10-RELATED 208 293 IPR045874 GO:0004672
Sebi376g00015 496 Gene3D Transferase(Phosphotransferase) domain 1 299 483 - -
Sebi376g00015 496 SUPERFAMILY Protein kinase-like (PK-like) 220 475 IPR011009 -
Sebi376g00015 496 Gene3D Phosphorylase Kinase; domain 1 201 298 - -
Sebi376g00015 496 Pfam Protein kinase domain 296 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi376g00015 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 326 338 IPR008271 GO:0004672|GO:0006468
Sebi376g00015 496 ProSitePatterns Protein kinases ATP-binding region signature. 244 266 IPR017441 GO:0005524
Sebi376g00015 496 ProSiteProfiles Protein kinase domain profile. 157 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi376g00015 Sebi-Chr376 368725 372314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi376g00015 227 490 Receptor kinase-like Gene Family AT5G38280 46.711 3.09e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Sebi376g00015 Pkinase 4.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi376g00015 - - qlo:115977167 419.083