Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi376g00013 ATGGAAGTTATGACCAACACCTTCAACAAAAAAAGCAAAGTAGCAGGTTCACAGAACATCATCCATCTCCAAAAGCTTTCTTTTTGGTTCGCCCCCCACTACTCGTCCACCTGGTTTTCTTCTTCTGTTTTTATAATAGCACCACCCCACTATAAGGTTCAGGACTATCATGGTTTACTCCTTTGTGATAAAAGCTCTTTATCTGGCTATGATGGTTTCAATACCACTTTGCATAACCTTGGAACTTCCAATGGTGTTTTGAGAGGTGGGTTGTCATCATCTCATTCATTGGTTTTTGAGAGTGAAAAGGGAGAGTTGGTGAAGTGCCCTTCAACTGCAAAGGTAGGAAAGAATGAGATCTCTGAGGCCAAAGCTTTAGCTGCTTTGAAGAGCCATAGTGAAGCAGAGAGGAGGAGGAGGGAGAGAATAAATGGTCATCTTGCAACACTACGTGGTCTTGTGCCCTCCACTGAAAAGATGGATAAAGCCACATTACTGGCTGAAGTAATTAGACAAGTGAAGGAATTGAAGAAGAATGCAATGGAAGCAAGCAAAGGTTATCTCATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATATGATGATGAAGGAGGAGATGGACCCATGTCTTATATGGCAACTATCTGCTGTGATTACAGACCTGAGATACTATCAGACATAAGACAGACACTCAATGCCCTTCAATTACAATTGGTAAAGGCAGAGATATCAACATTGGAAGGTAGAATGAAGAATGTGTTTGTCTTTACATGTTGCAAAAAGGAAAATGTTAATATTGAGGCATGTCAAGCTCTTGCAAGTAATGTTCACCAGGCACTAGATTCTGTGCTGGAAAAGGCTTCTAACTCAATGGAGTTCTCACTCAGAACGTCTCATGCAAGCAAGCGGAGAAGGCTATGCTTTTTTGAAACATCTACTTCCTCATTCAACCATGAATCTTGTTCATTCTGA 975 0.4113 MEVMTNTFNKKSKVAGSQNIIHLQKLSFWFAPHYSSTWFSSSVFIIAPPHYKVQDYHGLLLCDKSSLSGYDGFNTTLHNLGTSNGVLRGGLSSSHSLVFESEKGELVKCPSTAKVGKNEISEAKALAALKSHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAEVIRQVKELKKNAMEASKGYLIPMDADEVKVEPYDDEGGDGPMSYMATICCDYRPEILSDIRQTLNALQLQLVKAEISTLEGRMKNVFVFTCCKKENVNIEACQALASNVHQALDSVLEKASNSMEFSLRTSHASKRRRLCFFETSTSSFNHESCSF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi376g00013 324 Pfam Helix-loop-helix DNA-binding domain 131 176 IPR011598 GO:0046983
Sebi376g00013 324 Coils Coil 166 186 - -
Sebi376g00013 324 CDD ACT_UUR-ACR-like 215 258 - -
Sebi376g00013 324 Gene3D - 123 186 IPR036638 GO:0046983
Sebi376g00013 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 179 IPR036638 GO:0046983
Sebi376g00013 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Sebi376g00013 324 SMART finulus 133 182 IPR011598 GO:0046983
Sebi376g00013 324 PANTHER TRANSCRIPTION FACTOR BHLH30 85 311 IPR045847 GO:0003700|GO:0006355
Sebi376g00013 324 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi376g00013 Sebi-Chr376 330673 333689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi376g00013 69 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.700 1.79e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi376g00013 HLH 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi376g00013 - - gmx:100804756 397.512