Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi375g00075 ATGTTCGCCGGAGGAATTTTCCGTCATGGGTTGTTGCCTATTATTCTCACTGCTCTGTTTTTCCTCTGCCTCGCTACTCCTTCTCAATCAGATGAGCTTCAATCACTGATGAAGTTTAAGTCTTTTATCCAAAGTTCAGATGCAAATGTCTTCAGTTCTTGGACACAAGCAAATTCTCCCTGCCAATTCACTGGGATTGTCTGCAATTCCAATGGTTTTGTTTCAGAAATCAATCTTGCAAGGAAAAGGCTAGTGGGTACCCTTCCTTTTGATTCAATTTGCGAGCTTGAATCACTTGAGAAGATCTCTTTGGAGTCCAACTTCTTGTATGGCAGCATCAGTGAAGGGTTGAGGAATTGCAAAAACTTGCAGTACTTGGATTTGGGTGGGAATCAATTCACTGGGGCAGTGCCTGACTTGTCAACTCTGAACAAGTTGAAGTACTTGAATTTAAATGCTAGTGGAATTTCTGGGGCATTTCCATGGAAATCTTTGGAAAATTTAACTAGTCTCACATTCTTGAGCCTTGGGGATAACCTATTGGAAAAAACTCCTTTCCCTTTGGAGGTTTTAAAGCTTAACAAATTGTATTGGCTTTACCTCTCAAATTGCAGCATCACAGGGAAAATCCCAGCGGGTATTGGAAATCTCACTCAGCTTCAGAATCTTGAGCTTGCTGACAACCAATTGTCTGGTGAGATTCCAGCTGAAATTGGAAAGCTTCAGAGGCTGAGGCAACTTGAGCTATATGATAACTACTTGAGTGGGGAAATCCCAGTTGGATTTGGCAATCTTACTAATCTTGTTAACTTTGATGCTTCTAATAATCAACTTGAAGGTGGTCTTTCTGAGCTAAGGTCCTTGACAAACCTTTCATCCTTGCAGCTTTTTCAGAACCAACTCTCAGGAACAATACCAGAAGAGCTTGGTGATCTTAAAAACCTCACAGACCTTTCTCTTTACAGTAACAAGCTCACTGGTCATCTTCCTCAAAAGCTTGGCTCATGGGTTGGCATGCAATTCATTGATGTTTCAGACAATTTGCTTTCTGGTCCTATTCCACCTGACATGTGCAAGAACAACCAAATCACAGACATAGCACTCTTAAACAACAGCTTCACTGGAAGCATACCAGAAACATATGCAAAGTGCACATCTTTGGCTCGTTTCAGTGTAAATAAGAATTCACTCTCAGGTGTTGTTCCTTCAGGTATATGGGGCTTGCCAAATCTGGAGCTAATTGATCTTAGAATGAATCAGTTTGAAGGTCTAATATCATCTGATATTGGCAAAGCAAAATCTCTTGCGCAACTGTTTTTATCTAACAATAAGTTCTCAGGTGAGTTACCATTGGAAATCTCAGAAGCTTCTTCATTGGTATTAATTCAGCTAAGTTCAAATCAAATTTCTGGTCACATACCAGAAACGATTGGCAAGTTGAAGAAACTAACTAGTCTTACTTTGAATAACAACAATGTTTCTGGTATGATACCAGATTCTATTGGTTCTTGTGTTTCTCTTAATCAAATAAACCTTGCTGGTAACTCTCTTTCTGGGGTAATACCAGCTAGAATTGGGTCTCTTCCAACCCTCAATTCATTGAACTTGTCCTCAAACCAGCTTTCTGGTGAAATCCCATCAAGTTTATCATCCCTGAAACTTAGCATTCTTGATTTATCAAACAACCAGTTGTTTGGTTCCATACCAGAATCACTGGCTATTTCAGCCTTCAAAGATGGGTTCATGGGAAATCCTGGCTTATGTAGCCAGACTTTGAAAAATTTCCAACCTTGTTCAGTGGAATCAGGCAGCTCCAGGAGACTCAGAAACTTTTTACTCCTTTTCATTGCTGGTTTAATAGTACTGTTTGTTTCATCAGCATATTTCATATTCCTGAAACTGAAACAGAACAACTTTGAGAAGCCACTGAAGAGTAATTCTTGGGATGTCAAGCAGTACCATGTGCTGAACTTCAATGAGAGCGAAATCATTGATGGGATCAAGGCTGAGAATTTGATTGGAAAAGGAGGATCAGGGAATGTTTATAAGGTTATGCTTAAAAGTGGGGAAGAATTTGCAGTGAAACACATATGGACTTCAAATCCAAGTGATAAGGGAAATTGCAGGAGCAACTCAGCTATGCCTATGCTAAAAAGGAGTTCCAGGTCATGCAATTGGACTAATGTCATTGCTGGAACACTTGGCTACATGGCTCCTGAATATGCCTACACTTGTAAGGTGACAGAAAAGAGTGACGTTTACAGCTTTGGGGTGGTCCTGATGGAGTTGGTAACAGGGAAGAGGCCTATGGAGCCAGAGTTTGGAGAGAATAAGGACATTGTGTATTGGGTTTGCAGCAATATTAGAAGCAAAGAAGATGCGCTTCAATTAGTGGATTCTACCATTGCGAAGCATTTCAAAGAAGATGCCTTGAAGGTGTTGAGAATTGCAACATTATGCACAGCGAAAATTCCAGCTGCAAGACCATCAATGAGAATGTTGGTTCAAATGTTGGAAGAGGCAGAGCCTTGTGCTTCACCCAAAGTGATTGTGAACATAGATAATTAA 2568 0.403 MFAGGIFRHGLLPIILTALFFLCLATPSQSDELQSLMKFKSFIQSSDANVFSSWTQANSPCQFTGIVCNSNGFVSEINLARKRLVGTLPFDSICELESLEKISLESNFLYGSISEGLRNCKNLQYLDLGGNQFTGAVPDLSTLNKLKYLNLNASGISGAFPWKSLENLTSLTFLSLGDNLLEKTPFPLEVLKLNKLYWLYLSNCSITGKIPAGIGNLTQLQNLELADNQLSGEIPAEIGKLQRLRQLELYDNYLSGEIPVGFGNLTNLVNFDASNNQLEGGLSELRSLTNLSSLQLFQNQLSGTIPEELGDLKNLTDLSLYSNKLTGHLPQKLGSWVGMQFIDVSDNLLSGPIPPDMCKNNQITDIALLNNSFTGSIPETYAKCTSLARFSVNKNSLSGVVPSGIWGLPNLELIDLRMNQFEGLISSDIGKAKSLAQLFLSNNKFSGELPLEISEASSLVLIQLSSNQISGHIPETIGKLKKLTSLTLNNNNVSGMIPDSIGSCVSLNQINLAGNSLSGVIPARIGSLPTLNSLNLSSNQLSGEIPSSLSSLKLSILDLSNNQLFGSIPESLAISAFKDGFMGNPGLCSQTLKNFQPCSVESGSSRRLRNFLLLFIAGLIVLFVSSAYFIFLKLKQNNFEKPLKSNSWDVKQYHVLNFNESEIIDGIKAENLIGKGGSGNVYKVMLKSGEEFAVKHIWTSNPSDKGNCRSNSAMPMLKRSSRSCNWTNVIAGTLGYMAPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPMEPEFGENKDIVYWVCSNIRSKEDALQLVDSTIAKHFKEDALKVLRIATLCTAKIPAARPSMRMLVQMLEEAEPCASPKVIVNIDN 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi375g00075 855 SMART LRR_typ_2 408 431 IPR003591 -
Sebi375g00075 855 SMART LRR_typ_2 168 193 IPR003591 -
Sebi375g00075 855 SMART LRR_typ_2 528 552 IPR003591 -
Sebi375g00075 855 SMART LRR_typ_2 217 241 IPR003591 -
Sebi375g00075 855 SMART LRR_typ_2 121 143 IPR003591 -
Sebi375g00075 855 SMART LRR_typ_2 480 504 IPR003591 -
Sebi375g00075 855 SMART LRR_typ_2 553 579 IPR003591 -
Sebi375g00075 855 SMART LRR_typ_2 288 311 IPR003591 -
Sebi375g00075 855 SMART LRR_typ_2 96 120 IPR003591 -
Sebi375g00075 855 SMART LRR_typ_2 312 336 IPR003591 -
Sebi375g00075 855 FunFam Leucine-rich receptor-like protein kinase family protein 188 284 - -
Sebi375g00075 855 Gene3D Ribonuclease Inhibitor 141 357 IPR032675 -
Sebi375g00075 855 SUPERFAMILY Protein kinase-like (PK-like) 663 840 IPR011009 -
Sebi375g00075 855 ProSiteProfiles Protein kinase domain profile. 534 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi375g00075 855 SMART LRR_sd22_2 217 232 - -
Sebi375g00075 855 SMART LRR_sd22_2 168 190 - -
Sebi375g00075 855 SMART LRR_sd22_2 312 346 - -
Sebi375g00075 855 SMART LRR_sd22_2 265 293 - -
Sebi375g00075 855 SMART LRR_sd22_2 96 119 - -
Sebi375g00075 855 SUPERFAMILY RNI-like 328 587 - -
Sebi375g00075 855 Gene3D Ribonuclease Inhibitor 358 598 IPR032675 -
Sebi375g00075 855 ProSiteProfiles Leucine-rich repeat profile. 122 144 IPR001611 GO:0005515
Sebi375g00075 855 Pfam Protein tyrosine and serine/threonine kinase 734 838 IPR001245 GO:0004672|GO:0006468
Sebi375g00075 855 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Sebi375g00075 855 Pfam Leucine Rich Repeat 553 572 IPR001611 GO:0005515
Sebi375g00075 855 FunFam Probable inactive receptor kinase RLK902 29 187 - -
Sebi375g00075 855 SUPERFAMILY L domain-like 74 399 - -
Sebi375g00075 855 Gene3D Transferase(Phosphotransferase) domain 1 699 851 - -
Sebi375g00075 855 Gene3D Ribonuclease Inhibitor 31 140 IPR032675 -
Sebi375g00075 855 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Sebi375g00075 855 SMART serkin_6 667 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi375g00075 855 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 722 838 - -
Sebi375g00075 855 FunFam Receptor-like protein kinase HSL1 290 596 - -
Sebi375g00075 855 Pfam Leucine rich repeat 458 517 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi375g00075 Sebi-Chr375 853041 856183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi375g00075 727 851 Receptor kinase-like Gene Family AT1G09970 60.317 1.74e-45 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi375g00075 PK_Tyr_Ser-Thr 6.5e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi375g00075 - - gmx:100811489 1043.49