Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi375g00051 ATGGGGAGAGGAAAAATTGCGATTCGAAGGATCGACAATTCAACGAGCCGTCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCAAGAGAATTGTCCATTCTCTGTGATGCAGAAGTTGGATTGATTGTCTTCTCTAGCACTGGCAAGCTTTATGACTATGCTAGCACAAGAGTGCAGTATGACATGTTGCTTGCATTATTAGGAATATATCTGTGTGACTTTCATGTCTTTTGTGCGCTTGCCTTGCTATGTATTCTTTGA 273 0.4066 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTGKLYDYASTRVQYDMLLALLGIYLCDFHVFCALALLCIL 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi375g00051 90 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 63 - -
Sebi375g00051 90 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi375g00051 90 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi375g00051 90 SUPERFAMILY SRF-like 2 67 IPR036879 GO:0003677|GO:0046983
Sebi375g00051 90 CDD MADS_MEF2_like 2 63 IPR033896 GO:0000977|GO:0045944
Sebi375g00051 90 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi375g00051 90 Gene3D - 13 69 IPR036879 GO:0003677|GO:0046983
Sebi375g00051 90 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi375g00051 90 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi375g00051 90 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi375g00051 90 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi375g00051 Sebi-Chr375 534238 534796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi375g00051 1 60 MADS-box Gene Family AT2G14210 90.000 3.38e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi375g00051 SRF-TF 2.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi375g00051 K09264 - gmx:100805092 117.472