Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi375g00047 ATGAGTTCTGCAGGTGTTGGTGAAGATTGTCTAGGATGGGCAGCAAGAGATGCATCTGGAGTTCTGTCACCATACAAATTCAGTCGCAGGACTCTTGGGAATGAAGATGTTTATGTTAAAATTACACACTGTGGTGTTTGTTATGCTGATGTAATTTGGACAAGGAATAAACATGGGGACTCTAAGTATCCTGTTGTGCCTGGACATGAGATTGCTGGGATTGTAACAAAGGTTGGTTCCAATGTCCAACGTTTTAATGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCATGCAGAGATTGTGAGTTTTGTAATGACAGACTAGAGAATCATTGTATCAAGGGAGTCTACACTTTTAATGCTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCCAGTTCCATTGTAGTCCATGAAAGGTATTGCTTCATGATACCCAAAAGCTATCCTTTGGCTTCAGCGGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATTCTCCCATGATGCGTCACAAGATGAATCAACCAGGTAAATCTCTAGGAGTTGTTGGTCTTGGTGGCCTCGGTCATATGGCAGTGAAATTTGGAAAGGCATTTGGTTTGAGTGTAACAGTTTTCAGCTCTAGCATATCCAAGAAAGACGAGGCACTGAGCCTGCTTGGTGCAGACAAATTTGTTGTTTCATCTAATCAAGAGGAGATGAGGGCGTTGGCTAATTCATTGGACTTTATAATTGACACAGCATCTGGTGACCACCCATTTGATCCTTACATGTCACTATTGAAGAAATCTGGTGTTCTGGTCCTAGTTGGGTTCCCAAGTGAAGTCAAATTCAGCCCTGCAAGCCTTATTCTAGGAATGAGAACTGTTTCCGGAAGTGTGACAGGTGGTACAAAAGAAATACAGGAGATGGTTGACTTTTGTGCTGCTAACGAGATTCACCCAAATATAGAAGTGATTCCAATCGAGTATGCAACTGAAGCTCTTGAGAGGGTCATAAAAAAGGACGTGAAATATCGCTTTGTTATAGATATTGAAAACTCCCTTAAATAA 1065 0.4131 MSSAGVGEDCLGWAARDASGVLSPYKFSRRTLGNEDVYVKITHCGVCYADVIWTRNKHGDSKYPVVPGHEIAGIVTKVGSNVQRFNVGDHVGVGTYVNSCRDCEFCNDRLENHCIKGVYTFNAVDFDGTITKGGYSSSIVVHERYCFMIPKSYPLASAAPLLCAGITVYSPMMRHKMNQPGKSLGVVGLGGLGHMAVKFGKAFGLSVTVFSSSISKKDEALSLLGADKFVVSSNQEEMRALANSLDFIIDTASGDHPFDPYMSLLKKSGVLVLVGFPSEVKFSPASLILGMRTVSGSVTGGTKEIQEMVDFCAANEIHPNIEVIPIEYATEALERVIKKDVKYRFVIDIENSLK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi375g00047 354 FunFam Cinnamyl alcohol dehydrogenase 164 319 - -
Sebi375g00047 354 Pfam Zinc-binding dehydrogenase 191 313 IPR013149 -
Sebi375g00047 354 FunFam Putative cinnamyl alcohol dehydrogenase 6 320 349 - -
Sebi375g00047 354 Gene3D - 13 349 - -
Sebi375g00047 354 SUPERFAMILY GroES-like 16 182 IPR011032 -
Sebi375g00047 354 PANTHER ALDEHYDE REDUCTASE 9 352 IPR047109 GO:0016616
Sebi375g00047 354 CDD CAD1 12 348 IPR047109 GO:0016616
Sebi375g00047 354 Gene3D - 164 319 - -
Sebi375g00047 354 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 184 211 IPR029752 -
Sebi375g00047 354 FunFam probable cinnamyl alcohol dehydrogenase 13 179 - -
Sebi375g00047 354 Pfam Alcohol dehydrogenase GroES-like domain 35 147 IPR013154 -
Sebi375g00047 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 317 IPR036291 -
Sebi375g00047 354 SMART PKS_ER_names_mod 20 347 IPR020843 GO:0016491
Sebi375g00047 354 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi375g00047 Sebi-Chr375 497311 499069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi375g00047 2 354 Monolignol Biosynthesis Gene Families AT1G72680 74.504 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi375g00047 K00083 - gmx:100807617 629.402