LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi375g00044	ATGGCGGCATGTCAATACTGTAAGTTTACTCATCTACTTCCTTATTTGAACTTAACCATAACAATTTTGGCTTTGATAATCCCTCAAGCTGCTCTGTTAGACTTCAGCTTTCAGCAATTTCACGACAAGGAAGATACCTTGAATCTTGATGGAGATGTTTATTATGATAAGGGAGCTCTCCAACTCACCCAGTTTAAGAAAGACAGTGCTGGCAGGGTCACATATTACAAACAACTGCATCTTTGGGACAAGGACTCAAGAAAGCTCACAGATTTCACTTCCAATTTCTCCTTCATGATCAATCAACCAAACAAAACCCAACTTGGAGATGGCATCACATTCTTCCTTGCCAGCCCAAACTTTCCACTTCCTGTCCCTCCAGATGGAACTGGTATTGGCCTTGTAGGACGTCAACAAATGCAAGATCCAAATTATCCAAATGACCATCCATTTGTTGCAGTTGAGTTTGACACTTTTCCAAATAGATTTGATCCTCCATATGACCATGTAGGTATCAATATCAAAACTGTGAGAAGTCCTTTCACTACAGAATGGTTTAGTATTTTGGATGGGAGAATCTATGATGCCCAAATTAGCTATAATTCTAGCTCATACAATTTAAGTGTCACCTTTACAGGATATAAGAATAACATCACTGTGAAACAAGATTACTCCCATGTAGTTGATTTGAGAGAGGTCCTACCAGATTGGGTTCAGTTTGGCTTCTCTTCAGCAACAGGATTGTTATATGAGACACATACACTTTGTACTTGGTCTTTCAATTCGAGTTTGGACTTGGAAGTGCACAATAGTGAAAGCAAGACAAGGCTGGTGATGGGGCTGAGCATTGGGGCAGGTTTTTTAATTTTTGGTTTAGGAGTAGCTTGGCTTTTGATGTTGAAGATGAGAAGAGGAGAGGAAGATGACTTGGATCTTACTATGGACAATGATTTTGAAAAAGGGACTGGACCTAAAAAGTTTTCCTATAATGAACTTGTTAGAGCAACTCACAACTTTGCAAAAGAACAGAAGCTTGGAGAAGGAGGTTTTGGGGAAGTTTACAAAGGATTTATAAGAGACTTGGATGACTATGTTGCAGTTAAAAAGATATCAAGAGGATCTAGACAAGGTGTGAAAGAGTATGCCTCTGAAGTAAAGATCATTAGTCAACTGAGGCATAGGAATTTGGTGCAGCTCATGGGATGGTGCCACAAGAAAAATGATCTTCTTCTCATCTATGAGTTCATGTCAAATGGAAGCCTTGACTCCCATCTGTTTGGAGGCAAAAGCCTTCTGACATGGGGAGCAAGATACAACATTGCTGGAGGCCTAGCCTCAGCATTATTGTACCTACATGAAGAATGGGAGCAATGTGTAATTCATAGGGACATAAAATCAAGTAATGTTATGTTGGATTCAAATTTCAATGCTAAGCTTGGAGATTTTGGATTAGCCAGATTGTTGGATCATGACAAAGGGTCACAAACAACAGTTTTAGCTGGAACAATGGGATATTTGGCTCCTGAATCTACCACCAGAGGCAAGGCTAGTAGAGAGTCTGATGTATACAGTTTTGGTATTGTTGCTTTGGAGATAGCTTGTGGAAGAAAACCAATTGAAGTAAAAGCCAGTGAAGAACAAGTCCTTATGGTGGAATGGGTTTGGAAACTTTATGGGATTGGTAATCTATTAGAAGCAGCTGATCCAAGATTGTGTGGAGAGTTTGATGAGCAGGAAATGGAAAGGTTAATGATAGTTGGGCTATGGTGTGCTCACCCAGATTACACTTTGAGGCCTACAATGAGGCAAGCAGTTCAAGTACTTAACTTTGAAGCTCCATTGCCCATTCTGCCATCAAATATGCCAAAACCCACCTACACTATTCCCTCATTTACTGAATCTGCACCTTCAAGTTCTTCATCGTCTAGTGTTTATGCTTTTAGACTTACTCAAACAGAGCCTTCATCCAGTAGCTCATCACAATCCAACGCATCTGCCGCACTTCTGCGTACATACTAA	2019	0.4022	MAACQYCKFTHLLPYLNLTITILALIIPQAALLDFSFQQFHDKEDTLNLDGDVYYDKGALQLTQFKKDSAGRVTYYKQLHLWDKDSRKLTDFTSNFSFMINQPNKTQLGDGITFFLASPNFPLPVPPDGTGIGLVGRQQMQDPNYPNDHPFVAVEFDTFPNRFDPPYDHVGINIKTVRSPFTTEWFSILDGRIYDAQISYNSSSYNLSVTFTGYKNNITVKQDYSHVVDLREVLPDWVQFGFSSATGLLYETHTLCTWSFNSSLDLEVHNSESKTRLVMGLSIGAGFLIFGLGVAWLLMLKMRRGEEDDLDLTMDNDFEKGTGPKKFSYNELVRATHNFAKEQKLGEGGFGEVYKGFIRDLDDYVAVKKISRGSRQGVKEYASEVKIISQLRHRNLVQLMGWCHKKNDLLLIYEFMSNGSLDSHLFGGKSLLTWGARYNIAGGLASALLYLHEEWEQCVIHRDIKSSNVMLDSNFNAKLGDFGLARLLDHDKGSQTTVLAGTMGYLAPESTTRGKASRESDVYSFGIVALEIACGRKPIEVKASEEQVLMVEWVWKLYGIGNLLEAADPRLCGEFDEQEMERLMIVGLWCAHPDYTLRPTMRQAVQVLNFEAPLPILPSNMPKPTYTIPSFTESAPSSSSSSSVYAFRLTQTEPSSSSSSQSNASAALLRTY	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi375g00044	672	SMART	serkin_6	339	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi375g00044	672	ProSiteProfiles	Protein kinase domain profile.	339	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi375g00044	672	ProSitePatterns	Legume lectins beta-chain signature.	152	158	IPR019825	-
	Sebi375g00044	672	ProSitePatterns	Protein kinases ATP-binding region signature.	345	369	IPR017441	GO:0005524
	Sebi375g00044	672	Gene3D	Phosphorylase Kinase; domain 1	324	415	-	-
	Sebi375g00044	672	PANTHER	-	58	618	-	-
	Sebi375g00044	672	FunFam	L-type lectin-domain containing receptor kinase IX.1	324	415	-	-
	Sebi375g00044	672	ProSitePatterns	Legume lectins alpha-chain signature.	234	243	IPR000985	-
	Sebi375g00044	672	CDD	lectin_legume_LecRK_Arcelin_ConA	33	264	IPR001220	GO:0030246
	Sebi375g00044	672	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	459	471	IPR008271	GO:0004672\|GO:0006468
	Sebi375g00044	672	CDD	STKc_IRAK	345	609	-	-
	Sebi375g00044	672	Gene3D	Transferase(Phosphotransferase) domain 1	416	628	-	-
	Sebi375g00044	672	Gene3D	-	32	278	-	-
	Sebi375g00044	672	SUPERFAMILY	Protein kinase-like (PK-like)	323	638	IPR011009	-
	Sebi375g00044	672	SUPERFAMILY	Concanavalin A-like lectins/glucanases	31	266	IPR013320	-
	Sebi375g00044	672	FunFam	Lectin-domain containing receptor kinase A4.3	416	628	-	-
	Sebi375g00044	672	Pfam	Protein kinase domain	340	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi375g00044	672	Pfam	Legume lectin domain	33	273	IPR001220	GO:0030246
	Sebi375g00044	672	MobiDBLite	consensus disorder prediction	653	672	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi375g00044	Sebi-Chr375	482200	484218	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi375g00044	23	626	Receptor kinase-like Gene Family	AT5G10530	46.624	0.0	534

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Sebi375g00044		Pkinase	2.6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi375g00044	-		-	cam:101491058	816.609