Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi375g00043 ATGGCAGCATGCCAATTCTGTAAGTGTATTCATCTACTTCCTTATTTGGACTTAACCATCCTAATTTTGTCTTTGATAATCCCTCAGGCTGCTGTGTTAGACTTCACCTTTCAGCAATTTCACAGTAATGAAGATACCTTGAATCTTGTTGGAGATGTTTATCATGACAATGGAACTCTCCAACTCACCCGGTCTAAGAAAGACAGTGCTGGCAGGGTCACATATTCCAAACAACTTCATCTTTGGGACAAGGACTCAAGAAAACTCACTGACTTCACTTCCAAATTTTCCTTCATTATCAATCAACCAAACAAAACCCAATTTGGAGATGGCATCACATTCTTCCTTGCCAGCCCCAGGGACTTTCCACTTCCTGTCCCACCAGATGGAGCTGGTATTGGCCTTGTGGGACGTCAACAAATGCAAGATCCAAATTACACAAATGAGCATCCATTTGTGGCGGTTGAGTTTGACACCTCTCCAAATGATCCATTTGATCCTCCATATGACCATGTAGGTATCAATATCAACACCATGATGAGTCCTTTCACTACAAAATGGTTGAGTATTAAGGATGGGAGAGTACATCATGCCCATATTATCTACAATTCTAGTTCACATAATTTGAGTCTCATCTTTACAGGATATAAGAATAACATCACTGTCAAACAACACTACTTTCATGTAGTCGATTTGAGAGACTTCCTACCGGAGTGGGTTCAATTTGGCTTCTCTTCAGCAACAGGATTTGTTTATGAGATACACACGCTTTGCTCATGGTCTTTCAATACTAGTTTGGACTTGGAAGTGGTCAATAATGGGAGTTTCAAGTCAGACTCAGAGGTGCACAAGAATGAAATTAGCAGGAAAAAGCTGGTGAAAGTGGTAATAGGCCTCAGCACTGTGGCAGGTGTTTCAATTGTTGGTTTGGGGTTGGCTTGCCTTCTGATTTTGAACATGATGACAAGAGGCAAGGAAGATGACTTGGACAATGATTTTGAAAGAGAGACTGGACCTAAGAAGTTTTCCTATAATGAACTTGTTAGAGCAACTAACAACTTTGCAAAGGAACAGAAGCTTGGAGAAGGAGGTTTTGGGGAAGTTTACAAGGGATTTATAAGAGACTTGGATGACTATGTTGCAGTTAAAAAGATATCAAAGGGATCTAGTCAGGGTGTGAAAGAGTATGCCTCTGAAGTTAAGATCATTAGTCAACTGAGGCATATGAATTTGGTGCAGCTCATAGGATGGTGCCACAAGAAAAATGATCTTTTACTCATCTATGAGTTCATGTCAAATGGAAGCCTTGATTCCCATTTGTATGGAGGCAAAAGCCTTTTGACTTGGGCAGCAAGATACAACATTGCTGGAGGCCTAGCCTCAGCATTATTGTACCTACATGAAGAATGGGAACGATGTGTGATTCATAGGGACATAAAATCAAGTAATGTAATGTTGGATTCAAATTTCAATGCTAAGCTTGGAGACTTTGGATTAGCCAGATTGTTGGATCATGGAAAAGGGTCACAAACTACAGTTTTAGCTGGAACAATGGGATATTTGGCTCCTGAAGCTGCCACCAGAGACAAGGCTAGTAGAGGGTCAGATGTATACAGTTTTGGTATTGTTGCTTTGGAGATAGCCTGTGGAAGAAAACCAATTGAAGTAAAAGCTAGAGAAGAACAAGTCCTTATGATGGAATGGGTTTGGAAACTTTATGGGATAGGTAATCTATTAGAAGCAGCTGATCCAAGATTGTGTGGAGAATTTGATGAGCAAGAAATGGAAAGGTTAATGATAGTTGGGCTATGGTGTGCTCACCCAGATCACAATTTGAGGCCTACAATTAGGCAAGCAGTGCATGTACTTAACTCTGAAGCTCCATTGCCCAATCTACCATCAAATATGCCTGAACCCACCTACACTATTCCTTCATTTAATGTACCTGCACCTTCAACCTCTCCATCCTCTAGTGCTAATGCTTCTGGACTTGAACTTACTAAAGCAGAGCCTTCATCCAATAGCTCTTTCACTGGCTCCTCACAGTCCAATACACCTGCTGCATTTCTGCATACATACTAA 2082 0.4092 MAACQFCKCIHLLPYLDLTILILSLIIPQAAVLDFTFQQFHSNEDTLNLVGDVYHDNGTLQLTRSKKDSAGRVTYSKQLHLWDKDSRKLTDFTSKFSFIINQPNKTQFGDGITFFLASPRDFPLPVPPDGAGIGLVGRQQMQDPNYTNEHPFVAVEFDTSPNDPFDPPYDHVGININTMMSPFTTKWLSIKDGRVHHAHIIYNSSSHNLSLIFTGYKNNITVKQHYFHVVDLRDFLPEWVQFGFSSATGFVYEIHTLCSWSFNTSLDLEVVNNGSFKSDSEVHKNEISRKKLVKVVIGLSTVAGVSIVGLGLACLLILNMMTRGKEDDLDNDFERETGPKKFSYNELVRATNNFAKEQKLGEGGFGEVYKGFIRDLDDYVAVKKISKGSSQGVKEYASEVKIISQLRHMNLVQLIGWCHKKNDLLLIYEFMSNGSLDSHLYGGKSLLTWAARYNIAGGLASALLYLHEEWERCVIHRDIKSSNVMLDSNFNAKLGDFGLARLLDHGKGSQTTVLAGTMGYLAPEAATRDKASRGSDVYSFGIVALEIACGRKPIEVKAREEQVLMMEWVWKLYGIGNLLEAADPRLCGEFDEQEMERLMIVGLWCAHPDHNLRPTIRQAVHVLNSEAPLPNLPSNMPEPTYTIPSFNVPAPSTSPSSSANASGLELTKAEPSSNSSFTGSSQSNTPAAFLHTY 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi375g00043 693 ProSitePatterns Protein kinases ATP-binding region signature. 360 384 IPR017441 GO:0005524
Sebi375g00043 693 SUPERFAMILY Protein kinase-like (PK-like) 337 653 IPR011009 -
Sebi375g00043 693 FunFam L-type lectin-domain containing receptor kinase IX.1 339 430 - -
Sebi375g00043 693 CDD STKc_IRAK 360 624 - -
Sebi375g00043 693 FunFam Lectin-domain containing receptor kinase A4.3 431 643 - -
Sebi375g00043 693 ProSitePatterns Legume lectins alpha-chain signature. 236 245 IPR000985 -
Sebi375g00043 693 MobiDBLite consensus disorder prediction 631 684 - -
Sebi375g00043 693 Pfam Legume lectin domain 33 265 IPR001220 GO:0030246
Sebi375g00043 693 Gene3D Phosphorylase Kinase; domain 1 339 430 - -
Sebi375g00043 693 ProSitePatterns Legume lectins beta-chain signature. 153 159 IPR019825 -
Sebi375g00043 693 ProSiteProfiles Protein kinase domain profile. 354 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi375g00043 693 Gene3D Transferase(Phosphotransferase) domain 1 431 644 - -
Sebi375g00043 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Sebi375g00043 693 Gene3D - 31 289 - -
Sebi375g00043 693 SMART serkin_6 354 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi375g00043 693 CDD lectin_legume_LecRK_Arcelin_ConA 33 266 IPR001220 GO:0030246
Sebi375g00043 693 Pfam Protein kinase domain 355 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi375g00043 693 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 267 IPR013320 -
Sebi375g00043 693 PANTHER - 48 633 - -
Sebi375g00043 693 MobiDBLite consensus disorder prediction 638 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi375g00043 Sebi-Chr375 477478 479559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi375g00043 19 641 Receptor kinase-like Gene Family AT5G10530 45.723 7.86e-177 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Sebi375g00043 Pkinase 1.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi375g00043 - - cam:101491058 763.837