Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi375g00032 ATGATGAAAGCGAAGATGGAAATAAAGAAAATAGACAACATAGGAGCTAGGCAGGTAACATTTTCAAAGAGGAAGAAAGGGCTTTTTAAGAAGGCTCAGGAGCTTTCAACTCTTTGTGATGCTGAGATTGCTCTCACAGTCTTTTCTTCTGCTGGCAAGCTCTTCGAATACGCTACCTCAAGTGTGCAGCAGGTAGTTGAAAGGTACAATATGCATCCAAGCATTGACAGATTACAACACCCATCTACAGAGCTGCAGCCTGACAGTGATACCTATAACTACTTCATGATGAGCAAGGATGTGGCAGATAGGACTTGTGAACTGAGGAAATTGAATGGGGAAGAGCTGCAAGGATTAAAACCTCATGAACTACAGAAACTAGAGAAACTACTAAAAAAAGGTTTGGCCCGTGTTTCAAAAGCAAAGGATGAAATAATTGTAAAGGATATCACAGCGCTGAAGAAAAAGAAAGTTGAACTTGTGCAAGACAACCGACGACTGAAACAGAAACAAAGTCTTGCAAACGATCCAGGGCAGTCTTCCAAGTTAATCATGATTTGCAGCCCATCAAATCTTGCTGAAGATTCTGATAATTTTGATGCTTCTCTCTGCTTGGGATATGTGGAGCAAATAAGTGGTTGA 642 0.4081 MMKAKMEIKKIDNIGARQVTFSKRKKGLFKKAQELSTLCDAEIALTVFSSAGKLFEYATSSVQQVVERYNMHPSIDRLQHPSTELQPDSDTYNYFMMSKDVADRTCELRKLNGEELQGLKPHELQKLEKLLKKGLARVSKAKDEIIVKDITALKKKKVELVQDNRRLKQKQSLANDPGQSSKLIMICSPSNLAEDSDNFDASLCLGYVEQISG 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi375g00032 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi375g00032 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi375g00032 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi375g00032 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi375g00032 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Sebi375g00032 213 CDD MADS_MEF2_like 5 69 IPR033896 GO:0000977|GO:0045944
Sebi375g00032 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi375g00032 213 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Sebi375g00032 213 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi375g00032 213 Coils Coil 124 144 - -
Sebi375g00032 213 Coils Coil 150 170 - -
Sebi375g00032 213 Pfam K-box region 94 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi375g00032 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi375g00032 213 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi375g00032 Sebi-Chr375 329519 332923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi375g00032 1 170 MADS-box Gene Family AT2G22540 50.877 3.24e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi375g00032 K-box 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi375g00032 - - ahf:112786765 201.83