LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi375g00014	ATGGAGGATCCAGCCAACTGGAAGAAGCCAATGGCAAGCTATCTCGTACGCTACCATTCCGATCAGCTCCGCTCCATCACTTCTTCTCCCGATTCCAACCTTCATTTCCCTCTTTACGTCGATTTCGCAGAGTTGATGGAGGACGATCCTCGCATTGCTCGTCTCCTCTTTGCCCAACCCAACACCTACTTGCAAGTGTTCGATGATGCTGCTCTTTGGGCTCATAAAATCATCTTGGAAGATATGGCGGATGACAAGAATGGGATTGAGAAGAAATTCATTCATGTTCGCATTAACGTCAGTGGCTCGCCACTTGAATGCCCTGAGACTTTTCCAAGCATAGGACGTGTTCGAGTGCAGCACCGTGGAATCCTTCTCACTCTCAAAGGGATAGTGATCAGGTCCGGTGCAATCAAGATGCATGAAGGAGAGAGGAAGTACATGTGCCAGAAATGCAAAAACAGCTTCACAGTTTATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGCCCAATTCAGAAGTCTAAACCCTGTGGAGGCACAAAATTCCAGTATGTAGAAAATACTATAGTATGCCATGATTATCAGGAGATAAAAGTCCAAGAAAGTACACAGGTGCTAGGTGTCGGGGCGATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTAATTGTCACTGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAGGATGTGCGATGTGACCTTGATCCTGTATTAATAGCCAACAATGTAAGGAGAATTAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATTGTTATGAAATTCAAGCAGTTCTGGGTTCACTTCAAAGATGCACCTTTAAAAGGGAGGAACGCTATTCTACGAGGAATTTGCCCACAAATATTTGGTCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATTGGAGGTGTGCAACATGTCGATGCTTCTGGAACAAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGATCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGTGAGTGGATGTTGGAAGCTGGGGCCCTTGTCTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAACAGCAGACAATAAGTGTTGCCAAGGCCGGTCTTGTAACAACACTCAGCACTAGAACAACAGTATTTGGGGCCACAAATCCTAAGGGACAATATGATCCTGATCAACCTCTGTCTGTCAATACGACACTTTCTGGTCCTTTATTAAGCAGGTTTGATATTGTTCTAGTGCTCCTAGATACAAAGAATCCTGAATGGGATGCAGTGGTTTCATCTCATATTCTTTCTGAGGCAGAACCGGATAGAACCAACAATGATGAAGATCTAGCAAATATCTGGCCTCTTTCTACACTCAAGAGGTATATACACTATGTGAAAGAAACTTTCAGACCAGTCCTTACGAGAGAGGCTGAAATAGTTATATCCAGTTATTATCAACTTCAAAGGAAATCTGCAACTCATAATGCAGCTAGGACAACTGTCCGCATGCTGGAAAGTCTGATACGCCTAGCTCAAGCTCATGCAAGGCTGATGTTCAGAAATGAGGTCACTCGACTAGATGCCATCACAGCTATTTTATGCATAGAATCCTCCATGACAACCTCAGCTATTGTGGATTCAATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAGGAATGTATCCTTGCTAAGTAA	1920	0.4344	MEDPANWKKPMASYLVRYHSDQLRSITSSPDSNLHFPLYVDFAELMEDDPRIARLLFAQPNTYLQVFDDAALWAHKIILEDMADDKNGIEKKFIHVRINVSGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCQKCKNSFTVYPEVEARNSISLPSICPIQKSKPCGGTKFQYVENTIVCHDYQEIKVQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDDIVMKFKQFWVHFKDAPLKGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRTNNDEDLANIWPLSTLKRYIHYVKETFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDSIGNALHSNFTDNPDQECILAK	639

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi375g00014	639	CDD	MCM9	305	609	-	-
	Sebi375g00014	639	Gene3D	-	117	245	IPR012340	-
	Sebi375g00014	639	SMART	mcm	110	611	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Sebi375g00014	639	Pfam	MCM AAA-lid domain	528	609	IPR041562	-
	Sebi375g00014	639	SMART	AAA_5	344	493	IPR003593	GO:0016887
	Sebi375g00014	639	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	37	621	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Sebi375g00014	639	Pfam	MCM P-loop domain	304	507	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Sebi375g00014	639	Gene3D	-	141	197	-	-
	Sebi375g00014	639	ProSiteProfiles	MCM family domain profile.	302	505	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Sebi375g00014	639	SUPERFAMILY	Nucleic acid-binding proteins	35	252	IPR012340	-
	Sebi375g00014	639	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	312	613	IPR027417	-
	Sebi375g00014	639	Gene3D	-	277	615	IPR027417	-
	Sebi375g00014	639	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	479	487	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Sebi375g00014	639	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	401	415	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Sebi375g00014	639	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	343	358	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Sebi375g00014	639	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	429	442	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Sebi375g00014	639	Pfam	MCM OB domain	117	245	IPR033762	-
	Sebi375g00014	639	FunFam	Probable DNA helicase MCM9	280	614	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi375g00014	Sebi-Chr375	152047	159318	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi375g00014	1	639	Core DNA Replication Machinery Family	AT2G14050	75.969	0.0	1026

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi375g00014	K10738		-	gmx:100776255	1158.67