Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi375g00001 ATGGCAGTATTGCCCTCCTTAGGTGTCCCTATTCCGAAAGATCCTATATATTTCAGTTCAAGGAAAACAGGCACTTTGGTCTTTGGGCATTTTGGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTTAGAAAAGATGGGCATAATTGGAGAAAGAAAAAGGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGATAAAAGTTTTTAAGGGTGTATTTTCCAGGGATATGATGCACATAGTATTTGTCCACTACCTGGAAGTTAAGGGTAACAAGTCAAATGTTGGAGGAAATGCTGATAGTGATGAGGCCATATCAGATTCCCAAAATGTCAACTCTCCGTCATCTGGCTTTCCCACAAGTTATAGTAGTGTGCCTTCACTGAGTACAGATTCCGTGAGCCCAACTACCAGTTTGACATCTTTACGTGAAGATGCTGATTCTGGTGATCACGGACAGTCATCAATTTCTGGAACAGATTATATCCCACAATTTGATGGGGATAAATTTACGGGAAATGATATCACTTGTATCGATGGTCTGAAAGCACATGGCATGGCATCTTGGGACAGTGTCTTGCAACATACTGCCGAGTTGCACACTGATCCATCTCTTGTGTCATTTCCTTCCATCCCATCTGGTTCAATGGGAAACATGCTTGACCAAGAACATCACGTTTTGGGTGACCTTTTAATAAGCAAAAGTGGCCTCACTGATGGAGCAGGGACCTCTCAGTCTCTACAATCACATTGGCAGATTCCTTTTGAAGGAAATGCAGGACACATGCCGACCTTAACCCAATCATTGAGTTTGGATTTCGGATCTGATTTTGACACTAGTTTACTAGGGAATGAAGCTCATAATAGAAGTTCTGAAATTTCTCCTGTCCTGTTTAGTTTTCATGGTGAGCCAAAAGACCAGCTTGTGCAGCAAAACTATCCAGAACAGCATGTAGATGAACAATTACAACATGTACTAAAGCCCAATTCTGCAAATAAAGTTCCTGGTGAAGAAACTATCAACTATCCCTTAACTATGAGACGTACATTATTGGATAGTGACGAGAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGATTACTAAAGAACTTGCAGAGGTGGATGATTTGAATTTGCAGTCCTCACCTGGTATTTCCTGGAGTACAGATGAATGTGGGCATGTGATAGATGATAGCTCATTAAGCCCATCTCTCTCACAGGACCAACTGTTTAGCATAAATGATTTCTCACCTAAATGGGTTTGTGCTGAGTCAGAAACTGAGGTGTTGATCATTGGATCATTTTTGAAGAGTCAACCAGAGGTGACAATCTGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGATTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCACCTCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGTTCAAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTACAGAGAGGGCTTTTCTAGAAATGTAGATTTTGCAGATTTTTTCAACAGTTCAACCGATATGCTGCTTCATTTGCGACTGGAGGAGTTTCTTTCTTTAAAGCCAGTGCACCCTTCTAAACAAACCTTTGAGGGTGATATGGAGAAAAGAAAAATAATTTTGAAGCTTATTTCACTGAGAGAGGAAGAGGAATATTCAAGTAAGGAAGAGCTGACTATTGATACAGATATATCACAACACAAGATGAAGGAACATCTGTTTCATACGCAGGTTAAAGAAAAGCTGTACTCATGGCTTCTTCATAAAGTAACTGAGAGTGGCAAAGGGCCAAACGTGTTAGATAAGGATGGGCAGGGTGCGCTACATTTGGTAGCTGTTCTTGGTTATGATTGGGCCATAACCCCAATTTTAATTTCTGGAGTCAATATCAACTTCCGTGATGTGAATGGATGGACAGCTTTACATTGGGCTGCATCCTGTGGCAGAGAGCGGACAGTTGCCGTCCTTGTCTCCATGGGTGCAGATTGTGGGGCATTGACGGACCCATCTCCAGCATTTCCTTCAGGTAGAACAGCTGCAGATCTTGCCTCTAGCAACGGGCACAAAGGAATCTCTGGTTTTCTTGCCGAGTCTTCATTAACTAGCCACCTTGAATCTCTCACAATGGATGATCAACATAAAGGTGGCCGGCAAGAAATTTCAGGAATGAAGGTGGTGCAGACAGTCTCAGAACGAAGTGCAACACCTGTGCTCTATAGTGATATGCCAGATGCCCTCTGTCTTAAGGATTCTCTTACTGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGTATGAAGATGAGTTTGGATTGTCAGATCAGCGAGCTCTTTCCCTTCTAGCCTCTAAGGCATGCAAATCTGGACAAGGAGATGGTTTAGTCAATGCTGCTGCCATACAAATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATTCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACAATCATCTGGTCTGTGGGAATCCTGGAGAAGGTCATATTACGCTGGAGACGCAAGGGTAGTGGTCTACGCGGGTTTCGACAAGATGCCCTTAATAAAGTACCCGTCCAACAAAATGATTCACAGAAAGAGGATGATTATGATTATCTTAAGGAAGGACGGAAACAAAAAGAGGAAAAGATCCAAAAGGCCCTTTCTAGGGTTAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGTTTACTAAATGTTGTTGAAGACTTCCGTCAAACGAAGGCATGTGATATGAGTTTGATCAATTCTGAAGAGACAGTAGATGGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCATTCCTATAGCATTTGATTGA 3009 0.4184 MAVLPSLGVPIPKDPIYFSSRKTGTLVFGHFGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKIKVFKGVFSRDMMHIVFVHYLEVKGNKSNVGGNADSDEAISDSQNVNSPSSGFPTSYSSVPSLSTDSVSPTTSLTSLREDADSGDHGQSSISGTDYIPQFDGDKFTGNDITCIDGLKAHGMASWDSVLQHTAELHTDPSLVSFPSIPSGSMGNMLDQEHHVLGDLLISKSGLTDGAGTSQSLQSHWQIPFEGNAGHMPTLTQSLSLDFGSDFDTSLLGNEAHNRSSEISPVLFSFHGEPKDQLVQQNYPEQHVDEQLQHVLKPNSANKVPGEETINYPLTMRRTLLDSDESLKKVDSFSRWITKELAEVDDLNLQSSPGISWSTDECGHVIDDSSLSPSLSQDQLFSINDFSPKWVCAESETEVLIIGSFLKSQPEVTICNWSCMFGEVEVPAEILANGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDYREGFSRNVDFADFFNSSTDMLLHLRLEEFLSLKPVHPSKQTFEGDMEKRKIILKLISLREEEEYSSKEELTIDTDISQHKMKEHLFHTQVKEKLYSWLLHKVTESGKGPNVLDKDGQGALHLVAVLGYDWAITPILISGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGADCGALTDPSPAFPSGRTAADLASSNGHKGISGFLAESSLTSHLESLTMDDQHKGGRQEISGMKVVQTVSERSATPVLYSDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQYEDEFGLSDQRALSLLASKACKSGQGDGLVNAAAIQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTIIWSVGILEKVILRWRRKGSGLRGFRQDALNKVPVQQNDSQKEDDYDYLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKACDMSLINSEETVDGVEDLIDIDMLLDDDNFIPIAFD 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi375g00001 1002 ProSiteProfiles Ankyrin repeat region circular profile. 651 677 - -
Sebi375g00001 1002 SMART CG_1_2 11 94 IPR005559 GO:0003677
Sebi375g00001 1002 FunFam Calmodulin-binding transcription activator 2 825 873 - -
Sebi375g00001 1002 Pfam IPT/TIG domain 418 496 IPR002909 -
Sebi375g00001 1002 ProSiteProfiles Ankyrin repeat profile. 651 683 IPR002110 GO:0005515
Sebi375g00001 1002 Pfam CG-1 domain 32 72 IPR005559 GO:0003677
Sebi375g00001 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 825 876 IPR027417 -
Sebi375g00001 1002 SUPERFAMILY Ankyrin repeat 606 712 IPR036770 -
Sebi375g00001 1002 ProSiteProfiles CG-1 DNA-binding domain profile. 1 124 IPR005559 GO:0003677
Sebi375g00001 1002 Gene3D - 545 753 IPR036770 -
Sebi375g00001 1002 MobiDBLite consensus disorder prediction 102 165 - -
Sebi375g00001 1002 FunFam Calmodulin-binding transcription activator 2 411 507 - -
Sebi375g00001 1002 MobiDBLite consensus disorder prediction 102 148 - -
Sebi375g00001 1002 SMART iq_5 848 870 IPR000048 GO:0005515
Sebi375g00001 1002 SMART iq_5 825 847 IPR000048 GO:0005515
Sebi375g00001 1002 Gene3D - 826 873 - -
Sebi375g00001 1002 ProSiteProfiles IQ motif profile. 827 855 IPR000048 GO:0005515
Sebi375g00001 1002 SMART ANK_2a 651 680 IPR002110 GO:0005515
Sebi375g00001 1002 SMART ANK_2a 690 719 IPR002110 GO:0005515
Sebi375g00001 1002 Pfam Ankyrin repeats (3 copies) 598 679 IPR002110 GO:0005515
Sebi375g00001 1002 ProSiteProfiles IQ motif profile. 849 873 IPR000048 GO:0005515
Sebi375g00001 1002 Gene3D Immunoglobulins 411 506 IPR013783 -
Sebi375g00001 1002 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 33 964 - -
Sebi375g00001 1002 SUPERFAMILY E set domains 418 504 IPR014756 -
Sebi375g00001 1002 Pfam IQ calmodulin-binding motif 851 870 IPR000048 GO:0005515
Sebi375g00001 1002 Pfam IQ calmodulin-binding motif 828 846 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi375g00001 Sebi-Chr375 25596 33453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi375g00001 33 983 CAMTA Transcription Factor Family AT5G64220 49.804 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Sebi375g00001 Ank_2 6e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi375g00001 K21596 - gmx:100818124 1498.03