Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi374g00042 ATGTCTAGCCAGTCATTGGAGAACATGTTAGCTTGCTCAAAGGCACAACAAGAGAGAAAGCCAAGACCTCAGCCAGAACAAGCTCTGAAATGCCCCAGATGTGACTCCAACAACACCAAATTCTGTTACTACAACAATTACAGTCTTTCACAGCCAAGATATTTCTGCAAGTCTTGCAGGAGATATTGGACAAAAGGAGGGACATTGAGGAATGTTCCTGTGGGTGGAGGGTGCAGGAAGAACAAGAGATCATCATCATCCTCTGTATCATCAAAGAGGGCTCAAGATCAAGCATTCAATATTCCCAATCCCAATAACCCACTCACTGGTTTCCCTCAATTGTCTTATGACACCAGTGACCTTACCCTTGCATTAGCCAGGCTCCAAAAGGGTCACCAAATGGGTTTTGATGAACATGATCTTTCAATTTTGGGGAACCCCACAAGCACCCCATGTGATATTCTGGGCAATCCAGGAATGAACACTAACCCTGCAGGGTTCTTAGATGCACTTAGAAGTGGGTTCCTTGGAAACCAAAATCATGTGTACTATGGATATGGGAATGGGGGTGACATGGGGGAAGTGGACAATGGAAATGCTTGTGGGGTTGGGGTTAGTGGAGAAATGATGCTGCCTTATGATCAAGAAATGAGTATTGCCACAACTCAAGCAGTGACTGTCACTACTATGAAACAAGAGCTATGTAATGGCAGGGAACAACAAAGTGAGAGTAAGGTGTTGTGGGGTTTCCCTTGGCAGATCAATGGAGACACAAACATGGGTGAACTTGATTCAGGAAGAGCTAGTTGGAATGGTCTTACATCATCTTGGCATGGGCTTCTCAATAGTCCCCTAATGTAG 861 0.4483 MSSQSLENMLACSKAQQERKPRPQPEQALKCPRCDSNNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSVSSKRAQDQAFNIPNPNNPLTGFPQLSYDTSDLTLALARLQKGHQMGFDEHDLSILGNPTSTPCDILGNPGMNTNPAGFLDALRSGFLGNQNHVYYGYGNGGDMGEVDNGNACGVGVSGEMMLPYDQEMSIATTQAVTVTTMKQELCNGREQQSESKVLWGFPWQINGDTNMGELDSGRASWNGLTSSWHGLLNSPLM 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi374g00042 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 183 IPR045174 GO:0003700|GO:0006355
Sebi374g00042 286 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Sebi374g00042 286 MobiDBLite consensus disorder prediction 74 107 - -
Sebi374g00042 286 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Sebi374g00042 286 MobiDBLite consensus disorder prediction 80 107 - -
Sebi374g00042 286 MobiDBLite consensus disorder prediction 1 29 - -
Sebi374g00042 286 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi374g00042 Sebi-Chr374 1026543 1027403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi374g00042 27 286 C2C2-Dof Transcription Factor Family AT2G28510 44.561 3.26e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi374g00042 zf-Dof 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi374g00042 - - gmx:100799737 430.639