Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi374g00039 ATGGCCGGCGTTAATCCGAACGGCGGAGTCGCCGATTTTCCGGCGGTTCAAACGCACGGTGGACAGTTCATTCAGTACAACATATTCGGTAACCTCTTCGAGGTTACGGCCAAGTACCGTCCTCCGATCATGCCTATTGGTCGTGGCGCCTATGGAATCGTTTGTTCTCTGTTGAATACGGAGACGAATGAGTTGGTGGCTGTTAAGAAGATTGCGAACGCTTTCGACAATCACATGGACGCTAAGCGTACGCTCCGTGAGATTAAGCTTCTTAGACATTTGGATCACGAAAATGTAATTGGTTTAAGAGATGTTATTCCCCCACCCTTGCGTAGAGAGTTTAATGATGTCTACATAGCTACTGAACTCATGGATACCGATCTTCACCAAATCATTCGCTCCAATCAAAGTCTGTCAGAGGAGCACTGCCAGTACTTCTTGTATCAAATTCTTCGTGGACTAAAGTATATACATTCTGCAAACATAATCCATAGGGATTTGAAACCAAGCAACCTGTTGCTGAATGCAAATTGTGACTTGAAGATTATTGATTTTGGTCTTGCACGGCCAACTATAGAAAGTGACTTCATGACAGAATATGTAGTCACAAGATGGTACAGGGCTCCCGAATTGTTGTTGAACTCCTCAGATTACACCTCAGCGATAGATGTGTGGTCTGTTGGTTGCATCTTTATGGAGCTTATGAATAAAAAGCCTCTCTTTCCAGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAGCTTCTTGGCACTCCAACTGAGGCAGACCTCGGGTTAGTGAAAAATGAAGATGTGAGAAGATATATCCGACAACTTCCTCAATATCCTCGCCAGCCTTTACATAAGGTCTTCCCCCATGTTCATCCCATGGCCATTGATCTCATTGATAAAATGTTGACAGTTGATCCAACCAGAAGAATTACAGTTGAACAAGCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAACTGATGAACCAGTCTGCATGGAGCCATTCTCATTTGATTTTGAGCAACAGCACTTGGACGAAGAGCAAATAAAAGAGATGATCTACAGGGAGGCATTGGCACTCAATCCTGAGTATTCTTAA 1119 0.4388 MAGVNPNGGVADFPAVQTHGGQFIQYNIFGNLFEVTAKYRPPIMPIGRGAYGIVCSLLNTETNELVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGLRDVIPPPLRREFNDVYIATELMDTDLHQIIRSNQSLSEEHCQYFLYQILRGLKYIHSANIIHRDLKPSNLLLNANCDLKIIDFGLARPTIESDFMTEYVVTRWYRAPELLLNSSDYTSAIDVWSVGCIFMELMNKKPLFPGKDHVHQMRLLTELLGTPTEADLGLVKNEDVRRYIRQLPQYPRQPLHKVFPHVHPMAIDLIDKMLTVDPTRRITVEQALAHPYLEKLHDVTDEPVCMEPFSFDFEQQHLDEEQIKEMIYREALALNPEYS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi374g00039 372 Gene3D Phosphorylase Kinase; domain 1 23 363 - -
Sebi374g00039 372 ProSiteProfiles Protein kinase domain profile. 40 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi374g00039 372 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 39 328 - -
Sebi374g00039 372 SMART serkin_6 40 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi374g00039 372 Pfam Protein kinase domain 45 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi374g00039 372 SUPERFAMILY Protein kinase-like (PK-like) 45 335 IPR011009 -
Sebi374g00039 372 FunFam Mitogen-activated protein kinase 124 353 - -
Sebi374g00039 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Sebi374g00039 372 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Sebi374g00039 372 Gene3D Transferase(Phosphotransferase) domain 1 124 353 - -
Sebi374g00039 372 FunFam Mitogen-activated protein kinase 25 134 - -
Sebi374g00039 372 CDD STKc_TEY_MAPK 33 369 - -
Sebi374g00039 372 ProSitePatterns MAP kinase signature. 75 178 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi374g00039 Sebi-Chr374 955329 958005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi374g00039 4 372 MAP Kinase Gene Family AT3G45640 84.054 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Sebi374g00039 Pkinase 2.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi374g00039 K20536 - gmx:100801339 723.776