Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi374g00015 ATGGTGTCAGAGTCTCTCAATAGTGGAGTAGTTAATGGAGGGTTAGGCTCTGGATCATCAACAGAAGATGACAAAAGATTTAATAAGGTAACCCAAGTTGGAAGCAATGGATTGAGGGGACTGATTCAAATCCATGAGAGCTTGCAGAATTCCCAACAACCACCTCAAGGTCCAGTCATATGCTGGGAGAGATTTCTCCCTGTAAGATCAATAAAAATTCTGCTGGTAGAAGATGATGATTCAACACGCCATGTTGTCCGTGCTCTGTTACGGAATTGTAGTTATGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCATGGAAAGTCCTAGAAGATCCAGGAAATCACATAGATCTTGTCCTAACAGAGGTAGCTATGCCTATTTTATCTGGAATAGGTCTTTTGTGCAAGATCATGAGCCACAAAACTTTAAAGAATATCCCCGTGATTATGATGTCATCTCATGATTCAATGGGTATAGTCTTTAAGTGTTTATCAAAAGGCGCAGTTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAGCATGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGGGACACACACCAGAAAATTTGCCAAGTCAAGAAGTAATGATGCATCTGAAAACAACAGTGACAGCAGTGATGAGAATGACTATGGAAGCAGAGGCTTGAGTGTTCGAGGTGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTAGCTCAAGTTGGCAGTCCTCATCCAGTTTCTCCTCATAAACAATTGGCCGATGCCCCTGATAGCACGTGTGCCCAAGTGATGCATACAAAGCCTGAAAAAATCAGTAGTATATGGGTGCATGCGACAGAAAAAGAGTGCCATGAACTAATTGATCATCTTGATGATGTCGCAATGGGTAAAGACTTGGCTATGGGAATATCTTTGAATATTCAACTAGAGCGTCCACCTGAGGAACTGTCTAGCAATCCAATGGGTAAAGGGACAAATAAGATGTCTGATATGGATCGCATGCAGCTGATTAAAGGACAGAGTAATGTCTGTGAAAAAGGAAAACTGGAATACAACGGTGATAAAACCAGGACACAGGAAAATCAAGCTATGAATGTTGTTGATGTTACTGATAGCAACAGTCCACAGGCTAAAAGCAGAGACTTGAACACTCCAAATGGGTTTTCTGGCTTCTCACAAACAAAAGCAAGCAGTTCCTTCAAACAGCATCCATCCCTTGAACTAACTTTGAAGAGGCTGGGAGAAGTAAGAGATGTTAAAAATGTCACAGGTGATGAATGCAATATTTTGAGACATTCAGATCTGTCAGCATTCTCAAAATATAATACTGCTTCTTCTGCTAATCAGGCTCAAACTGGAAATGTTGGAAGCTGTTCCCCCCTAGACAATAGCTCAGTTGCACCAAATACAGAGATAATACACAACTTTCCATCTAATTCAAATGGCACACCTCGAAATCAACAGTCTAATGAGAGCAACAACATCAATGACATGGCCTCCACTAATACATATCTTAGCACTAAACCTGTAACTTTTGACAAGAAGCCAGAGTCTGTAAGAGGGATTGGCTCATTTAATTCTTCTGAACTCCAGACTGTGCAGAACAATAGTATCTCTTCATCTCAGAAGAAAACTTCTGCCCAAGAAGAATATGCAGAAATTGTTAAAGGACAAGTGGGAGGCTCTGAACAAGGATTCCAAGTCGAGCACACTCATTATCAGCTTCAGCATCATAATCACATTGCCCATAGAGCCACAGTAGATCTCCAATCAGACCATGATCTTTTACGAAAAAGCTCAAGCAAAGCTGCTCAGCAATGTGTATCATCAAATGCGTTTGGACCAGCAGAAAGCAATGCTGCAAACTATGGGTTGGATGGAAATGCAGCTGAGAGCGATCATGGGAGCAATGGACAGGACGGAAGCAATAGCTTGACAATAAGAACAATGAATATGGAGAATGGCAATGTGGCTGCTGGGAGTTTTGGAGTTGGTGGCATTGATAGGATAAACATTGTGAATGGGGTAGATGAAGGACGGATTGCGTTGAGAGAGGCTGCCTTGACCAAATTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAAAAGAGGGTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGGCCACGTATAAGGGGGCAATTTGTAAGACGAATAGTGTCCAATACCATAGAAGAAAGAGATAAACAAAGCGACAACCTGGCATCTATGGATAATTCTAGCGACACTAGCCCGTTTTACATGTTCACCTGGGTAGAAGCTTGGAGGTCTGTGCTCGAGGAATCTGTGAGTAGGTTTCTTGAATTGGTTGCCCTTGAAAAGAAAGGGAGCATGGAGTTTCATAACTACGAAGCAGGGACAGTTCAGGGGATGAGCCATGTTCTCTGA 2469 0.4208 MVSESLNSGVVNGGLGSGSSTEDDKRFNKVTQVGSNGLRGLIQIHESLQNSQQPPQGPVICWERFLPVRSIKILLVEDDDSTRHVVRALLRNCSYEVTAVSNGLQAWKVLEDPGNHIDLVLTEVAMPILSGIGLLCKIMSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESGTHTRKFAKSRSNDASENNSDSSDENDYGSRGLSVRGGSDNGSGTQSSWTKCLAQVGSPHPVSPHKQLADAPDSTCAQVMHTKPEKISSIWVHATEKECHELIDHLDDVAMGKDLAMGISLNIQLERPPEELSSNPMGKGTNKMSDMDRMQLIKGQSNVCEKGKLEYNGDKTRTQENQAMNVVDVTDSNSPQAKSRDLNTPNGFSGFSQTKASSSFKQHPSLELTLKRLGEVRDVKNVTGDECNILRHSDLSAFSKYNTASSANQAQTGNVGSCSPLDNSSVAPNTEIIHNFPSNSNGTPRNQQSNESNNINDMASTNTYLSTKPVTFDKKPESVRGIGSFNSSELQTVQNNSISSSQKKTSAQEEYAEIVKGQVGGSEQGFQVEHTHYQLQHHNHIAHRATVDLQSDHDLLRKSSSKAAQQCVSSNAFGPAESNAANYGLDGNAAESDHGSNGQDGSNSLTIRTMNMENGNVAAGSFGVGGIDRINIVNGVDEGRIALREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRRIVSNTIEERDKQSDNLASMDNSSDTSPFYMFTWVEAWRSVLEESVSRFLELVALEKKGSMEFHNYEAGTVQGMSHVL 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi374g00015 822 PANTHER TWO-COMPONENT RESPONSE REGULATOR 72 411 IPR045279 GO:0009736
Sebi374g00015 822 CDD psREC_PRR 73 176 - -
Sebi374g00015 822 MobiDBLite consensus disorder prediction 390 415 - -
Sebi374g00015 822 MobiDBLite consensus disorder prediction 651 665 - -
Sebi374g00015 822 MobiDBLite consensus disorder prediction 1 21 - -
Sebi374g00015 822 MobiDBLite consensus disorder prediction 1 26 - -
Sebi374g00015 822 MobiDBLite consensus disorder prediction 194 251 - -
Sebi374g00015 822 MobiDBLite consensus disorder prediction 216 232 - -
Sebi374g00015 822 MobiDBLite consensus disorder prediction 643 665 - -
Sebi374g00015 822 MobiDBLite consensus disorder prediction 487 516 - -
Sebi374g00015 822 ProSiteProfiles Response regulatory domain profile. 72 190 IPR001789 GO:0000160
Sebi374g00015 822 Gene3D - 70 230 - -
Sebi374g00015 822 SMART REC_2 71 186 IPR001789 GO:0000160
Sebi374g00015 822 FunFam Two-component response regulator-like PRR37 71 229 - -
Sebi374g00015 822 SUPERFAMILY CheY-like 69 195 IPR011006 -
Sebi374g00015 822 Pfam Response regulator receiver domain 73 184 IPR001789 GO:0000160
Sebi374g00015 822 Pfam CCT motif 703 744 IPR010402 GO:0005515
Sebi374g00015 822 ProSiteProfiles CCT domain profile. 703 745 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi374g00015 Sebi-Chr374 454324 486241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi374g00015 18 477 Response Regulator Gene Family AT5G60100 46.709 1.55e-98 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Sebi374g00015 Response_reg 1.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi374g00015 K12129 - gmx:100785796 1066.22