Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi374g00014 ATGGGTTGCTTTTGTTTCCCAGGGAAATCAAGGGAAAAATCGGTGACCGAAGACTATGGCCACACCCAGAAGCCCACCAATTTAACTGCTGCAGGTAATGCCAAAGTTGATTTCCAAGTAAATGGGAAAAAAGAAGATAGTTCTAAGGATGATCAACTTGCTCTGGACGTGAAGAATTTAAATATAAAGGAGGAGGTTTCCGAGGGTGGACAAAATAATGGTCAGCGGGCACAGACATTCAGTTTTAATGAACTTGAAGTTGCAACAGGAAATTTTAGGTCGGATTGCTTTTTGGGTGAGGGAGGCTTTGGCAAGGTTTACAAGGGGCACTTGGAGAAAATAGACCAGGTTGTAGCTATAAAGCAACTTGACCCTAATGGACTTCAAGGAATTCGGGAATTTGTTGTTGAAGTGTTAACATTGAGTATGGCAGACCACCCAAATCTTGTCAAGTTGCTTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTTTACGAATACATGCCATTGGGATCTTTAGAGAACCATTTACTTGATCTTCCGCCTGGTAGAAAACCACTTGATTGGAATACAAGAATGAAAATAGCAGCTGGTGCAGCTAGGGGTTTGGAGTATCTGCATGATAAAATGAAGCCTCCTGTCATATACCGTGACTTGAAATGCTCGAACATTTTGTTAGGTGAGGGCTATCATCCCAAGTTATCTGATTTTGGCTTGGCAAAAGTAGGCCCAATTGGTGATAAGACCCACGTTTCAACAAGGGTTATGGGCACATATGGGTACTGTGCCCCAGATTATGCAATGACTGGTCAGTTGACATTCAAGTCAGATATTTACAGCTTTGGGGTTGTTCTTTTGGAGCTCATCACAGGCAGGAAAGCTATTGACCATACAAAACCTGCCAAAGAACAAAATCTGGTTGCATGGGCAAGACCTTTATTCAGAGATAGGAGAAAATTCTCACAAATGGTTGACCCATTGCTTGAAGGTCAATATCCTGTGAGAGGTTTATACCAAGCTCTTGCTATTGCAGCAATGTGTGTTCAAGAACAGCCTAATATGCGGCCTGTTATAGTTGATGTGGTTACAGCTCTAAATTACCTTGCTTCCCAGAAGTATGATCCCTCAGTCCATCCAGTACAAGGCTCTAAAAGTCCATCTCCGAGAGTGAAAAAGGATGATGATCATAGACACATTTTTAGTAATGATGAAACAGACAGATCAGTAAACTAG 1236 0.4215 MGCFCFPGKSREKSVTEDYGHTQKPTNLTAAGNAKVDFQVNGKKEDSSKDDQLALDVKNLNIKEEVSEGGQNNGQRAQTFSFNELEVATGNFRSDCFLGEGGFGKVYKGHLEKIDQVVAIKQLDPNGLQGIREFVVEVLTLSMADHPNLVKLLGFCAEGEQRLLVYEYMPLGSLENHLLDLPPGRKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKPAKEQNLVAWARPLFRDRRKFSQMVDPLLEGQYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPSVHPVQGSKSPSPRVKKDDDHRHIFSNDETDRSVN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi374g00014 411 SUPERFAMILY Protein kinase-like (PK-like) 78 381 IPR011009 -
Sebi374g00014 411 FunFam probable serine/threonine-protein kinase RLCKVII 63 168 - -
Sebi374g00014 411 MobiDBLite consensus disorder prediction 10 30 - -
Sebi374g00014 411 PANTHER OS07G0668900 PROTEIN 49 377 - -
Sebi374g00014 411 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Sebi374g00014 411 Gene3D Phosphorylase Kinase; domain 1 61 168 - -
Sebi374g00014 411 SMART serkin_6 92 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi374g00014 411 MobiDBLite consensus disorder prediction 388 411 - -
Sebi374g00014 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Sebi374g00014 411 FunFam Serine/threonine-protein kinase PBS1 169 384 - -
Sebi374g00014 411 MobiDBLite consensus disorder prediction 376 411 - -
Sebi374g00014 411 CDD STKc_IRAK 98 367 - -
Sebi374g00014 411 ProSiteProfiles Protein kinase domain profile. 92 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi374g00014 411 Gene3D Transferase(Phosphotransferase) domain 1 169 382 - -
Sebi374g00014 411 Pfam Protein tyrosine and serine/threonine kinase 97 304 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi374g00014 Sebi-Chr374 434662 438222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi374g00014 1 371 Glycoside Hydrolase AT3G07070 56.032 4.27e-148 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Sebi374g00014 PK_Tyr_Ser-Thr 6.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi374g00014 - - gmx:100804000 718.768