Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi374g00011 ATGGAACCATTTCCAAGAGACCCTCGCGGTTCGCTCGAAGTGTTCAACCCTTCCTCTTCTTACTCCACAGAGAAACCAATCAACTCGCCGTTACGCTCCCAACCGTCGTGGAAAAATTGGATAGACCCACGCGCCAATGACACTGCACAACCACGCGATTCCAATTCCGATGAAGTTACCGCCGGCGACGGCGCTACCTCCTGGATGGCGATCAAGGACCCTACTCCTCCGCCTGCACCGACGCTCGCCGCCGTCCTCGGCGAGGCACTGCCTGCGACCGGCGAATTAGGCTCCGCGGCGGCGCAGAGGGCGGCGGAGTGGGGGTTGGTGCTGAAAACTGACACGGAAACCGGGAAGCCGCAGGGAGTAGCGGTTCGGAAATCCGGCGGCGGTTCGAGGAGGGACTCGAACAACTCCGTGAGGAGCTCCGGCGAATCCTCCGACGACGGTAGGGAACCCCGGGGAATACCGAGGGTTTCGGAGGATTTGAGAGACGCTTTGTCAACGTTTCAACAAACTTTCGTAGTTTCGGATGCTACCAAACCCGATTACCCGATAATGTATGCCAGTGCCGGGTTCTTTAAGATGACGGGTTATACATCCAAAGAGGTCATAGGGAGGAACTGTCGATTTTTACAGGGAGCGGAAACGGATCCAGATGACGTGGCAAAGATAAGAGAAGCGTTACAAGGGGGAACGTCTTATTGTGGAAGGTTACTGAATTACAAGAAGGATGGGACACCCTTTTGGAATCTTCTCACTATTGCGCCTATCAAGGACGACCATGGCAAAGTCCTTAAATTTATCGGAATGCAAGTGGAGGTTAGCAAGCACACGGAGGGGTCCAAGGAGACCATGCTACGTCCCAATGGATTGCCCGAATCCTTGATTCGATATGATGCTCGTCAGAAAGAGAAAGCAAGCTATTCAGTATCAGAGTTGGTGCAGGCGGTGAGGCGGCCACGGGCACTCAGTGAATCAGGTGGGCGTCCCTTGATAAAAAAGCCATCACGTGGTTACAATGCTGCTGCACAAGAGAAAACAGAGAAACCATCAAGGAGAAAATCCGAAAGTGTGGCTTCATTTAGACGAAAATCACATGCAGGAGACATAACTTCAATGGAGCGTATCTCTGAGCTCCCTGAAAAGAAAAACAAGAACCCACGTCGCCGTTCTTTCATGGGGTTCATCAGGAAAAGTCAGTCCAACTATGAAACCTTCAATGATGAAGAATTTGTTATTGAGGACAGCTCTGAGGCTAGTGAGGATGATGAGAGGCCTGATAGTATTGATGACAAAGTACAGAAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATCGAGAAGAACTTTGTCATTACTGATCCGAGGCTTCCTGACAATCCCATTATCTTTGCATCTGATAGCTTCTTAGAGCTTACTGAGTATAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCGGCAACTGTGAGAAAAATTAGAGAAGCTATTGACAATCAAACAGATGTTACTGTACAGCTCATTAATTATACAAAGAGTGGTAAAAAGTTCTGGAACCTGTTTCATTTGCAACCAATGCGTGATCAGAAGGGAGAGGTCCAGTATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTGGAGCCTCTTCACAACCGCATTGCAGAAGATACTGCAAAGGAGGGAGAACAATTGGTAAAGCAAACTGCAGAAAATGTTGATGATGCATTGAGAGAACTTCCAGATGCTAATTTGAAACCAGAAGATCTATGGATAAATCATACAAAAGTGGTTCACCCCAAACCTCATAGGAAAGATGAAGCTGCTTGGAAAGCTATTCAGAAGATCCTAGAAAGTGGAGAACAGATAGGCTTGAAGCATTTTAGGCCAATTAAACCCTTGGGATCGGGAGATACTGGAAGTGTCCATTTGGTGGAGCTATGTGGAACTGGTCAATATTTTGCCATGAAGGCTATGGAGAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACGGAGAGAGAAATCCTTGACATGTTGGATCACCCTTTTCTTCCTGCTTTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTACTGTCCTGGAGGAGAACTGTTCCTGCTTCTTGACCGACAGCCAACAAAGGTTCTCAAGGAAGATGCAGTGAGACTTTCTTCCAATCATTTTGCCACCCTTATTCATTCTATCCAGCTTCTAATTCCAGCTACAAATGAAAAGAAGAAACAGCACAAATATCAACAGGCTCCAATATTTATGGCTGAACCTATGAGAGCATCGAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGCCATACTAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTCTATATGAAATGTTTTATGGTTATACACCATTCAGGGGAAAGACTAGGCAAAAAACATTTACAAATATTCTCCACAAGGATCTTAAATTTCCCAAAAGTAAACAGGTGAGAGATTCTTCTCCAGCACCACCTAGTGTTCACACTAGTTGCTTGCAGGTAACTCTCAGTGCAAAACAGTTAATATACCGCTTGTTGCAGAGAGACCCCAATTGCAGATTGGGTTCAAAGGGAGGAGCAAATGAAATTAAGCATCATCCCTTCTTCCGGGGTGTCAACTGGGCCCTAGTTCGCTGCACGAAACCTCCTGAGCTTGATGCTCCTCTCTCCGAGACAACTGAAGAAGAAAAGGAAGCTAAATATGTTGATCCTGGGCAAGAGGATATGAATGTCTTCTGA 2856 0.4625 MEPFPRDPRGSLEVFNPSSSYSTEKPINSPLRSQPSWKNWIDPRANDTAQPRDSNSDEVTAGDGATSWMAIKDPTPPPAPTLAAVLGEALPATGELGSAAAQRAAEWGLVLKTDTETGKPQGVAVRKSGGGSRRDSNNSVRSSGESSDDGREPRGIPRVSEDLRDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGAETDPDDVAKIREALQGGTSYCGRLLNYKKDGTPFWNLLTIAPIKDDHGKVLKFIGMQVEVSKHTEGSKETMLRPNGLPESLIRYDARQKEKASYSVSELVQAVRRPRALSESGGRPLIKKPSRGYNAAAQEKTEKPSRRKSESVASFRRKSHAGDITSMERISELPEKKNKNPRRRSFMGFIRKSQSNYETFNDEEFVIEDSSEASEDDERPDSIDDKVQKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIAEDTAKEGEQLVKQTAENVDDALRELPDANLKPEDLWINHTKVVHPKPHRKDEAAWKAIQKILESGEQIGLKHFRPIKPLGSGDTGSVHLVELCGTGQYFAMKAMEKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRLSSNHFATLIHSIQLLIPATNEKKKQHKYQQAPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKTRQKTFTNILHKDLKFPKSKQVRDSSPAPPSVHTSCLQVTLSAKQLIYRLLQRDPNCRLGSKGGANEIKHHPFFRGVNWALVRCTKPPELDAPLSETTEEEKEAKYVDPGQEDMNVF 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi374g00011 951 MobiDBLite consensus disorder prediction 112 157 - -
Sebi374g00011 951 Gene3D PAS domain 173 327 - -
Sebi374g00011 951 SUPERFAMILY PYP-like sensor domain (PAS domain) 457 556 IPR035965 -
Sebi374g00011 951 ProSiteProfiles PAC domain profile. 233 287 IPR000700 -
Sebi374g00011 951 MobiDBLite consensus disorder prediction 320 393 - -
Sebi374g00011 951 MobiDBLite consensus disorder prediction 416 435 - -
Sebi374g00011 951 ProSiteProfiles PAS repeat profile. 159 230 IPR000014 -
Sebi374g00011 951 Gene3D Phosphorylase Kinase; domain 1 636 775 - -
Sebi374g00011 951 PANTHER PROTEIN TWIN LOV 1 288 634 - -
Sebi374g00011 951 NCBIfam PAS domain S-box protein 185 279 IPR000014 -
Sebi374g00011 951 NCBIfam PAS domain S-box protein 466 556 IPR000014 -
Sebi374g00011 951 Pfam Protein kinase domain 644 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi374g00011 951 Pfam Protein kinase domain 788 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi374g00011 951 SMART pac_2 236 278 IPR001610 -
Sebi374g00011 951 SMART pac_2 518 560 IPR001610 -
Sebi374g00011 951 CDD PAS 456 556 IPR000014 -
Sebi374g00011 951 FunFam LOV domain-containing protein 430 594 - -
Sebi374g00011 951 MobiDBLite consensus disorder prediction 13 62 - -
Sebi374g00011 951 FunFam LOV domain-containing protein 641 725 - -
Sebi374g00011 951 SUPERFAMILY Protein kinase-like (PK-like) 626 928 IPR011009 -
Sebi374g00011 951 Gene3D Transferase(Phosphotransferase) domain 1 786 931 - -
Sebi374g00011 951 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Sebi374g00011 951 Gene3D PAS domain 429 594 - -
Sebi374g00011 951 Pfam PAS domain 464 556 IPR000014 -
Sebi374g00011 951 Pfam PAS domain 180 276 IPR000014 -
Sebi374g00011 951 ProSiteProfiles Protein kinase domain profile. 642 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi374g00011 951 ProSiteProfiles PAS repeat profile. 441 514 IPR000014 -
Sebi374g00011 951 Coils Coil 573 593 - -
Sebi374g00011 951 FunFam Putative LOV domain-containing protein 173 329 - -
Sebi374g00011 951 SUPERFAMILY PYP-like sensor domain (PAS domain) 180 272 IPR035965 -
Sebi374g00011 951 ProSiteProfiles PAC domain profile. 515 569 IPR000700 -
Sebi374g00011 951 SMART serkin_6 642 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi374g00011 951 SMART pas_2 161 230 IPR000014 -
Sebi374g00011 951 SMART pas_2 443 512 IPR000014 -
Sebi374g00011 951 MobiDBLite consensus disorder prediction 1 80 - -
Sebi374g00011 951 MobiDBLite consensus disorder prediction 347 389 - -
Sebi374g00011 951 CDD PAS 186 275 IPR000014 -
Sebi374g00011 951 MobiDBLite consensus disorder prediction 924 951 - -
Sebi374g00011 951 MobiDBLite consensus disorder prediction 927 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi374g00011 Sebi-Chr374 354812 367419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi374g00011 4 951 AGC Kinase Gene Family AT3G45780 65.000 0.0 1232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Sebi374g00011 Pkinase 1.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi374g00011 K20715 - gmx:100804524 1499.18