Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi373g00005 ATGGAGATTGGAAATCTCAATCAAATTAACTTTATTCTATTGGGAAATAATAGGTTGAATGGATCTATTCCTTCAGAACTCTTCAACATTTCAACTTTGGAATTCTTGTATCTTGCAAGGAATTCTTTCTCAGGTGTTCTTCCATCAGATATGGGATATGGTCTTCCTCGCTTGAAAGAACTGTATGTGTTTGCAAACAAACTTTTTGGAAACATTCCAAATGGTATATCTAATGCTTCTGAGCTCACTGCAATCGATTTTAGTGACAATCAATTTAGTGGTATTATACCCAATGCATTTGGAGATTTAACAAACCTCGAATGGCTTGGTTTAGCTGTGAATAATTTGACGACAGATGACCCTACTGAATTCAAACTCCTTACTTCATTGACAAGTTGCAGATACTTGACATATCTGGCTATTTCAAAAAACAGTTTCCAGACAAAACTTCCCAGATCTATTGGAAACTTATCCATGTCTCTAGAAAACTTTTTAGCAGCTTCCTGTGGAATTAATGGTGTTATTCCACTTGAAATTGGTAACATAAGTAACTTGATATACTTGTCTTTGGGTGGGAATGATTTGACTGGGCCAATGCCTAGTACAATCAAAAGGTTACAAAATCTTCAGTATTTGGATCTTGGCTACAATGGTCTACAAGGATCCATTGTTAATGAGCTTTGTGAAATTAGGAGTTTGAGTGAGCTAAATCTAACAAATAATAAACTTTCAGGAGAGTTGCCAACATGCATAAGAAATATGACTTCTCTTCGAAAAGTTTACATAGGGTCTAATAGATTGACTGGGATACCTTCTTCTTTTTGGGGTCTTAGAGATATCTTAGAGCTAGACTTATCCTCCAATGCTTTAATTGGAAATTTACCACTTGATGTAGGGCAGTTGAGAGCTGTTGTATTACTGAATCTATCAAAAAATGAGATTTCAAGCAACATTCCTACAACCATTGGTTCCTTGAAAACTTTGCAAACCCTTTCCTTGGCACATAACAAATTTCAAGGGTCTATTCCTACATCAATTGGCGAAATGGCAAGCTTGAGTTTCTTAGACTTATCCCAAAATCTTTTGACTGGTGTGATTCCAAAATCCTTAGAATCACTTTCTTATCTTCAATACATTAACTTTTCATACAATAGATTACAAGGAGAGATTCCTGATGGTGGACCTTTCATAAATTTCACAGCTTCATCTTTCATGCATAATGAAGCACTTTGTGGCAATCCACGCCTACAGGTACCTCCATGTGATAAACAAGATAGGCGAAGGTCAATTGCAAAGATGCTTTTACTCAAATGCATGTTGCCTATAATTGTGTTAATCATTTTGGTTGTTGCTTGCATAATACTTCTACAACATAAAAGGAAAAAGGATGAAAATCCACTTGAAAAGGATTTATCAACTTTAGGAGTTCCAAGAAGGATTTCTTATTATGAACTTGTACGAGCAACTAATGGATTCAATGAGAGCAATTTAGTTGGAAGGGGGAGCTTTGGTTCTGTGTATCAAGGGATTCTCTCTAGTGGGATGATGGTTGCAATTAAAGTATTTGATTTGAACTTGGAAGCAACATCAAGGAGCTTTGATGTAGAATGCAATGCAATGCGTAATCTACGACATCGAAATCTTGTTAAGATTATAAGTAGTTGTTCAAATGTTGATTTCAAATCTTTGGTAATGGAATTCATGTCAAATGGAAGTGTGGAAAAATGGTTATACTCAGGCAACTATTTTCTAGACTTCTTGCAAAGGTTGAATATAATGATTGATGTGGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCAATTGTTCATTGTGATCTGAAACCTAGTAATGTTTTACTAGATGAAAACATGGTTGCACATGTAAGTGATTTTGGCATTGCAAAGCTTTTGGATAAAGGACAGTCTAAATCTCATACTGAGACTTTGGCTACTCTTGGCTACGTTGCACCAGGATCACCGAGGCCACATGCTGTAATGTCTAGGAAAGGGGTTCCTCCATGGGACTGCCCACTGCACCCTGCCCATCCCTAA 2061 0.3654 MEIGNLNQINFILLGNNRLNGSIPSELFNISTLEFLYLARNSFSGVLPSDMGYGLPRLKELYVFANKLFGNIPNGISNASELTAIDFSDNQFSGIIPNAFGDLTNLEWLGLAVNNLTTDDPTEFKLLTSLTSCRYLTYLAISKNSFQTKLPRSIGNLSMSLENFLAASCGINGVIPLEIGNISNLIYLSLGGNDLTGPMPSTIKRLQNLQYLDLGYNGLQGSIVNELCEIRSLSELNLTNNKLSGELPTCIRNMTSLRKVYIGSNRLTGIPSSFWGLRDILELDLSSNALIGNLPLDVGQLRAVVLLNLSKNEISSNIPTTIGSLKTLQTLSLAHNKFQGSIPTSIGEMASLSFLDLSQNLLTGVIPKSLESLSYLQYINFSYNRLQGEIPDGGPFINFTASSFMHNEALCGNPRLQVPPCDKQDRRRSIAKMLLLKCMLPIIVLIILVVACIILLQHKRKKDENPLEKDLSTLGVPRRISYYELVRATNGFNESNLVGRGSFGSVYQGILSSGMMVAIKVFDLNLEATSRSFDVECNAMRNLRHRNLVKIISSCSNVDFKSLVMEFMSNGSVEKWLYSGNYFLDFLQRLNIMIDVASALEYLHHGSSIPIVHCDLKPSNVLLDENMVAHVSDFGIAKLLDKGQSKSHTETLATLGYVAPGSPRPHAVMSRKGVPPWDCPLHPAHP 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi373g00005 686 SMART serkin_6 492 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi373g00005 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Sebi373g00005 686 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Sebi373g00005 686 Gene3D Transferase(Phosphotransferase) domain 1 568 671 - -
Sebi373g00005 686 ProSiteProfiles Protein kinase domain profile. 492 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi373g00005 686 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 129 425 - -
Sebi373g00005 686 Gene3D Phosphorylase Kinase; domain 1 475 567 - -
Sebi373g00005 686 SUPERFAMILY Protein kinase-like (PK-like) 469 660 IPR011009 -
Sebi373g00005 686 Pfam Leucine rich repeat 81 131 IPR001611 GO:0005515
Sebi373g00005 686 Pfam Leucine rich repeat 231 290 IPR001611 GO:0005515
Sebi373g00005 686 Pfam Leucine rich repeat 306 362 IPR001611 GO:0005515
Sebi373g00005 686 SMART LRR_typ_2 254 276 IPR003591 -
Sebi373g00005 686 SMART LRR_typ_2 301 325 IPR003591 -
Sebi373g00005 686 SMART LRR_typ_2 103 126 IPR003591 -
Sebi373g00005 686 SMART LRR_typ_2 206 230 IPR003591 -
Sebi373g00005 686 SMART LRR_typ_2 349 372 IPR003591 -
Sebi373g00005 686 SMART LRR_typ_2 55 79 IPR003591 -
Sebi373g00005 686 Pfam Leucine Rich repeat 207 226 IPR001611 GO:0005515
Sebi373g00005 686 FunFam Serine-threonine protein kinase plant-type 473 567 - -
Sebi373g00005 686 SUPERFAMILY RNI-like 55 392 - -
Sebi373g00005 686 Pfam Protein kinase domain 493 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi373g00005 686 Gene3D Ribonuclease Inhibitor 1 128 IPR032675 -
Sebi373g00005 686 Gene3D Ribonuclease Inhibitor 129 429 IPR032675 -
Sebi373g00005 686 SUPERFAMILY L domain-like 3 72 - -
Sebi373g00005 686 PANTHER OS04G0122200 PROTEIN 4 660 - -
Sebi373g00005 686 FunFam Os07g0541700 protein 568 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi373g00005 Sebi-Chr373 324978 328769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi373g00005 2 660 Receptor kinase-like Gene Family AT3G47570 39.826 2.25e-143 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi373g00005 Pkinase 3.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi373g00005 - K13420 mtr:25485995 898.271