Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi372g00033 ATGAATCTTCTTGTTCTGTTTTTTCCCATTTGGGTGCTGAGCATTTCTCTTTCATCAGCAATTCTTCATGCTGCAGCATCCCCCATTTTTGTCTCTCAATCTTCTGCAAATGCACAAGCAACATCTCCAGGAATTCAGGAGGTTAGAATAGTGCACCACCAGAATTTGAACAAGAGAATTCTAATAGCACTAATTGCTTGTTCTACTCTTCTTGGTGGAACCTTCCTATTCTTATTATATGTCTGGTTCCGTCGACATAAAAACTTAAGAAGCTCCAATATTAAAAGCCATGGAACCATGGAGGCTGCAAAAGGGGAAGCCTTAAGCACTATTGATGCTAAAGTTAACTACTCAAGGGTGGCAGATAAGAAGAGTTCAGTTGCTATTTTTGACTTTCAGTTGTTAGAAGCTGCAACAAACAACTTTAGCACTAGTAATGTTATGGGAGAGAGTGGTTCTAGAATTGTTTACAGGGCTTGTCTTGAAGAACATTTCCGGGCAGCTGTGAAAAAAGCAGATAGTAATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATTCGGCATCAGAATATCATTAAACTTTTGGGTTATTGTATTCATGGTGAATCAAGGTTTCTTGTTTATGAATTGATGGACAATGGATCTCTGGAAACTCAATTGCATGGGCCTAATCGTGGATCATCTTTAACTTGGCATCTCCGGTTAAGAATTGCAATTGATGTTGCCAGAGCATTAGAATATCTCCATGAGCACTCCAATCCTCCTGTAGTTCATAGAGACCTAAAATCTTCTAATGTTCTTTTGGATTCTAACTTGAATGCCAAGCTATCAGATTTTGGACTTGCTATAGCTTCTGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTGGGATACGTGGCACCTGAGTACATATCACATGGTAAACTAACTGATAAGAGCGATGTCTATGCTTTCGGGGTTCTTCTTCTAGAACTTCTAACTGGAAGAAAGCCCATGGAGAACATGTCTTCAGACCAATATCAATCCCTAGTCTCATGGGCCATGCCTCAACTAACTGATAGATCAAAGCTTCCAAGTATTCTGGATCCTGTCATCAGAGACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTACTGTGTGTGCAAGCAGAACCAAGTTATAGGCCACTAATAACAGATGTTCTGCATTCTCTCATCCCTTTGGTACCCGTTGAGCTTGGAGGGTCACTTAGAGTTACAGAACCAATCCGCTCAGAGAACTCCAATTGA 1299 0.4042 MNLLVLFFPIWVLSISLSSAILHAAASPIFVSQSSANAQATSPGIQEVRIVHHQNLNKRILIALIACSTLLGGTFLFLLYVWFRRHKNLRSSNIKSHGTMEAAKGEALSTIDAKVNYSRVADKKSSVAIFDFQLLEAATNNFSTSNVMGESGSRIVYRACLEEHFRAAVKKADSNADREFENEVSWLSKIRHQNIIKLLGYCIHGESRFLVYELMDNGSLETQLHGPNRGSSLTWHLRLRIAIDVARALEYLHEHSNPPVVHRDLKSSNVLLDSNLNAKLSDFGLAIASGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVLLLELLTGRKPMENMSSDQYQSLVSWAMPQLTDRSKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPIRSENSN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi372g00033 432 Gene3D Transferase(Phosphotransferase) domain 1 215 413 - -
Sebi372g00033 432 ProSiteProfiles Protein kinase domain profile. 142 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi372g00033 432 SUPERFAMILY Protein kinase-like (PK-like) 122 408 IPR011009 -
Sebi372g00033 432 FunFam probable receptor-like protein kinase At1g80640 215 413 - -
Sebi372g00033 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Sebi372g00033 432 Pfam Protein tyrosine and serine/threonine kinase 156 365 IPR001245 GO:0004672|GO:0006468
Sebi372g00033 432 Gene3D Phosphorylase Kinase; domain 1 103 214 - -
Sebi372g00033 432 PANTHER OS01G0750732 PROTEIN 32 411 - -
Sebi372g00033 432 SMART serkin_6 142 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi372g00033 Sebi-Chr372 1036671 1039555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi372g00033 1 354 Receptor kinase-like Gene Family AT1G80640 47.027 1.21e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Sebi372g00033 PK_Tyr_Ser-Thr 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi372g00033 - - gmx:100811188 709.523