Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi372g00029 ATGATGAACGGTGAAATATTCATACAAACAGCCCCCACTACCACCTTTCTTCCCAAATCAAACCCCGCCATAACCCACTTCACATTTGAACCAATTTCCTCCACAAACCACCTCATCAACTCCTTCTCTCCTCCATGCAACCAAACAAGTAGTGATCTCGAAGGAATCGCTGCCATTGTTGGAGAGCATGTCCTCTTCGGAGGCAAACAACACAATAGCACTCAAAACAACAATGAAACAAGTTCCAAAACCCCAAAGAAAGAAGAGAAAACCGGTCACAAGAATACCAATAACAATAACATTTCTTCTGTGAGTAAGAGATACAGAGGAGTGAGGAAGAGACCCTGGGGGAGGTGGTCAGCGGAGATACGCGACAGAATCGGGCGGTGCCGACACTGGCTAGGAACTTTTGACACTGCGGAGGAGGCGGCGCGTGCGTATGACGCGGCAGCGAGGCGCTTGAGGGGCTCCAAAGCTCGAACAAACTTTGAGATACCCTCTGTTTTGCCAACTTCCTCTTCTTCCGAAGTGAAAAGGGGGGTCAGTGGTGACGGTGGTTCTCGTAAGGCTAAAGGTGTACGTGGCAGTGGTAGGAAGTGCTCTGTTGTTACCTCTGTTGCTCAGTTGTTCAGTGGGGTGCCTGAAATTGTAAGAGGTAGTAATGGTGATGAGAAAGAAAGCAAAGGGTTGGAGCTGGACTTGAAACTTGGTGTAACCTTTGTTGGTAAAAATTAA 735 0.4789 MMNGEIFIQTAPTTTFLPKSNPAITHFTFEPISSTNHLINSFSPPCNQTSSDLEGIAAIVGEHVLFGGKQHNSTQNNNETSSKTPKKEEKTGHKNTNNNNISSVSKRYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPTSSSSEVKRGVSGDGGSRKAKGVRGSGRKCSVVTSVAQLFSGVPEIVRGSNGDEKESKGLELDLKLGVTFVGKN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi372g00029 244 CDD AP2 106 165 IPR001471 GO:0003700|GO:0006355
Sebi372g00029 244 MobiDBLite consensus disorder prediction 170 195 - -
Sebi372g00029 244 MobiDBLite consensus disorder prediction 68 108 - -
Sebi372g00029 244 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Sebi372g00029 244 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Sebi372g00029 244 FunFam Ethylene-responsive transcription factor 2 106 165 - -
Sebi372g00029 244 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 84 177 - -
Sebi372g00029 244 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Sebi372g00029 244 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
Sebi372g00029 244 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Sebi372g00029 244 SUPERFAMILY DNA-binding domain 107 164 IPR016177 GO:0003677
Sebi372g00029 244 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi372g00029 Sebi-Chr372 907197 907931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi372g00029 17 170 AP2-EREBP Transcription Factor Family AT1G80580 51.875 3.75e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi372g00029 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi372g00029 - - aip:107614619 211.46