Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi372g00027 ATGAGAAGATGGGTGAGGGTAGTCTTCGGTTCTCTGGATCTTCATCGCGAAGTAGATCTTCACCGCGAAGAAGAGGACGCTCCCAATGGCGAGGATGAAGGCACTGGAGCTCAAATGACTCCGATCATCAAACTCGAAGAGGACGAAGAAAATGATGTGAAGTTAGGCGCTGGATATATAGGCCGTACTCTGAACCCAAAGCGTAAAGCAGAACAAGAGCTTCCTCTCATTCTCTCAGTCGAGCTCAAGATCGGTGGTTCCTCTGTTCCTGTTGCTGACCTCGTTGATGACTCTGATGTATACCCAACTTCTTCTGCTCGCGACACCTTGCTGCATACTTGCTTCTCTTGCTCAGTCCCTAAGTTCGTTCACGAGCATATTGTTCCAGATCTCTGCAGCACCGTTACTTCTGATTTCGTCCATTCAAACACCAGCACCGGCGCCACTGCGAAGGTCTTCATCAGAGGCATGGAGATCACGCATCCTGATCTCTTCAATAATGATATGGTTGTGGTTCACGGTCTTCAAGGTTTTGTCTCTCCACTATCTCTGTTCTCTTGTGATGTAGAGAGGATGACCTCACTCTCCATCCCGTTCCATCCCGATCATCGCTCCAGTCATCATCTCCACAATCCCGGTGCCACGATGCAGCCTTCTATAATGCGCCTCATGCTCAGAGACACCATTCTCAGGCTCCGTAGCAACAGGTTCAACATACTAGCCCTCACCATGAAGGTGAAGTACACAAAGCTCATCACTCTCAACAACGTGACCGTATTTGCAGTTGATGACTTTTCCATCTTCTCAGCAGTTATGCCTTGTGCTGTCATGACCTTTGCAGGCTATGGTAAATTCATAATGGTTCCTTCACTCCTGAGAGGATTGAGGTACATACACTCTGCCAACGTTGTGTACAGAGATCTAAAACCAAGCAATTTACTTCTGAATTATTCAGAATATACTGCAACTATTGATATATGGTCGGTTGGTTGCATTTTGCTGGAGATAATTAGAAGGGGTCTTTTATTTCTTGGCAAAGATCACTATGTTCAGCAGTTGGCGTTCATAACTGAATTATTAGTAGGCATAGCCATTGTTTCAGGTCTAGCTTTGACAGTTCTTACATATTCAGTTGGTCATGTCTCTGGTGGCCATTTCAATCCTACAGTCATAATTGCTCTGGCAGATGTCCAAAAAATTCAATTGAAACTTGTGCCTTCTTATGTGTTGGGAAACCGATATGAATCTGGCACTCTGTTTGTGGCTAATTGTCTTATAGATATGTCTTCCAAATATGGAGATATTGATTCTGCTGGTTTCGCTGGCAGTGATAGTTATGACAGTGTTGGTGATGGTGGTGGCAGGCATGGTTTTGCCAATAATGGATATGATGGAAGTGTTGTTGATGGCAGTGGTCAATTGGATGGTGCAAAGCAACATGATGAAATTTACAGCTTTTGGTGGTTTGTTTTTGGCAGCTCCTAG 1485 0.4485 MRRWVRVVFGSLDLHREVDLHREEEDAPNGEDEGTGAQMTPIIKLEEDEENDVKLGAGYIGRTLNPKRKAEQELPLILSVELKIGGSSVPVADLVDDSDVYPTSSARDTLLHTCFSCSVPKFVHEHIVPDLCSTVTSDFVHSNTSTGATAKVFIRGMEITHPDLFNNDMVVVHGLQGFVSPLSLFSCDVERMTSLSIPFHPDHRSSHHLHNPGATMQPSIMRLMLRDTILRLRSNRFNILALTMKVKYTKLITLNNVTVFAVDDFSIFSAVMPCAVMTFAGYGKFIMVPSLLRGLRYIHSANVVYRDLKPSNLLLNYSEYTATIDIWSVGCILLEIIRRGLLFLGKDHYVQQLAFITELLVGIAIVSGLALTVLTYSVGHVSGGHFNPTVIIALADVQKIQLKLVPSYVLGNRYESGTLFVANCLIDMSSKYGDIDSAGFAGSDSYDSVGDGGGRHGFANNGYDGSVVDGSGQLDGAKQHDEIYSFWWFVFGSS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi372g00027 494 SUPERFAMILY Protein kinase-like (PK-like) 288 360 IPR011009 -
Sebi372g00027 494 SUPERFAMILY Aquaporin-like 360 410 IPR023271 -
Sebi372g00027 494 Gene3D - 53 118 IPR029068 -
Sebi372g00027 494 PANTHER OS02G0491300 PROTEIN-RELATED 109 271 - -
Sebi372g00027 494 SMART serkin_6 223 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi372g00027 494 Pfam Protein kinase domain 289 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi372g00027 494 Gene3D Transferase(Phosphotransferase) domain 1 287 315 - -
Sebi372g00027 494 Gene3D Transferase(Phosphotransferase) domain 1 316 360 - -
Sebi372g00027 494 Pfam Major intrinsic protein 358 411 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi372g00027 Sebi-Chr372 838996 841204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi372g00027 290 360 MAP Kinase Gene Family AT1G07880 49.091 6.57e-21 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Sebi372g00027 MIP 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi372g00027 - - tpra:123913794 227.639