Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi372g00026 ATGACTCCGATCATCAAACTCGAAGAGGATGAAGAAAATGTTGTGAAGTTAGGCGCTGGATATATAGGCCGTACTCTGAACCCTAAGCGTAAAGCAGAACAAGGGCTTCCTCCCATTCTCTCAGTCGAGCTCAAGATCGGTGGTTCCTCCGTTCCTGTTGCTGACCTCGTTGATGACTCTGATGTATACCTAACTTCTTCTGCTCGCGACACGTTGCTGCATACTTGCTTCTCTTGCTCTGCCCCTAAGTTCGTTCACGAGCATATTGTTCCAGATCTCTGCATCACCGTTACTTCCGATTTCGTCCATTCAAACACCAGCACCGGCGCCACTGCGAAGGTCTTCATCAGAGGCATGGAGATCACGCAACCTGATCTCTTCAATAACGATATGGTTGTGGTTCACAGTCTTCAAGGTTTTGTCTCTCCACTATCTCTGTTCTCTTGTGATGTAGAGAGGATGACCCCACTCTCCTTCCCGTTCCATCCCGATCATCGCTCCAGTCAGCATCTCCACAATCCCGGTGCCACAATGCAGCCTTCTATAATGCGCCTCATGCTCAGAGACGCCATTCTCAGGCTCCGTAGCAACAGGTTCAACATACTAGCCCTCACCATGAAGGTGAAGTACGCAGAGCTCATCACTCTCAACAATGTGACCGTGTTTGCAGTTGATGACTTTTCCATCTTCTCAGCAGTTATGCCTTGTGTTGTCATGACCTTTGCAGGCTATGGTAAATTCATAATGGTTCCTTCACTCCTGAGAGGATTGAGGTACATACACTCTGCCAACGTTTTTTACAAAGATCTAAAACCAAGCAATTTACTTCTGAATTATTCAGAATATACTGCAACTATTGATATATGGTCGGTTGGTTGCATTTTGCTGGAGATAATTAGAAGGGGTCTTTTATTTCTTGGCAAAGATCACTATGTTCAGCAGTTGGCGTTCATAACTGAATTATTAGTAGGCATAGCCATTGTTTCAGGTCTAGCTTTGACGGTTCTTACATATTCAGTTGGTCATGTCTCTAGTGGCCATTTCAATCCTACAGTCATAATTGCTCTGGCAAATGTCCAAAAAATTCAATTGAAACTTGCGCCTTCTTATGTGTTGGGAAATCGATATGAATCTAGCACTCTGTTTGTGGCTAATTGTCTCATAGATATGTCTTCCAAATATGGAGATATTGATTCTGCTGGTTTCGCTGGCAGTGATAGTCATGACAGTGTTGGTGATGGTGGTGGCAGCCATGGTTTTGCCAGTAATGGATATGATGGAAGTGTTGTTGATGGCAGTGGTCAATTGGATGGTGTAGAGCAACATGATGAAATTTACAGCTTTTGGTGGTTTGTTTTTGGCAGCTCCTAG 1371 0.4442 MTPIIKLEEDEENVVKLGAGYIGRTLNPKRKAEQGLPPILSVELKIGGSSVPVADLVDDSDVYLTSSARDTLLHTCFSCSAPKFVHEHIVPDLCITVTSDFVHSNTSTGATAKVFIRGMEITQPDLFNNDMVVVHSLQGFVSPLSLFSCDVERMTPLSFPFHPDHRSSQHLHNPGATMQPSIMRLMLRDAILRLRSNRFNILALTMKVKYAELITLNNVTVFAVDDFSIFSAVMPCVVMTFAGYGKFIMVPSLLRGLRYIHSANVFYKDLKPSNLLLNYSEYTATIDIWSVGCILLEIIRRGLLFLGKDHYVQQLAFITELLVGIAIVSGLALTVLTYSVGHVSSGHFNPTVIIALANVQKIQLKLAPSYVLGNRYESSTLFVANCLIDMSSKYGDIDSAGFAGSDSHDSVGDGGGSHGFASNGYDGSVVDGSGQLDGVEQHDEIYSFWWFVFGSS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi372g00026 456 SUPERFAMILY Protein kinase-like (PK-like) 248 321 IPR011009 -
Sebi372g00026 456 Pfam Major intrinsic protein 319 373 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi372g00026 456 Gene3D Transferase(Phosphotransferase) domain 1 278 322 - -
Sebi372g00026 456 Gene3D Transferase(Phosphotransferase) domain 1 249 277 - -
Sebi372g00026 456 SUPERFAMILY Aquaporin-like 322 372 IPR023271 -
Sebi372g00026 456 Gene3D - 16 81 IPR029068 -
Sebi372g00026 456 PANTHER OS02G0491300 PROTEIN-RELATED 90 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi372g00026 Sebi-Chr372 834414 835946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi372g00026 252 322 MAP Kinase Gene Family AT1G07880 48.182 1.26e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Sebi372g00026 MIP 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi372g00026 - - tpra:123913794 233.417