Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi372g00025 ATGGCAGACCCCACTTCATTTCCGGTCTCCCACTTTCCAGTGGAGCAGTCATGGGACACTTTGCCTCTTCACATGGAAATGGGTGATGATGAAAAGCATCTATTTGAACAGTGCCACAGTAGTGATGATGAAGAGTTCTTGAGAGACATCCTACAGCAACCAGCTTTGTCTTTTGAAGAATGTCAAAGTGAATCTTTTGTCCAAAATAACAACTTCACTGCCACAACCACAACAAATGAGATGGCGTGCTCCTCTCAGAAAAGGCTTCATCCCTCATCCTCGTCTCCAAAGACATTCATTCTGTCTTTCGATAAATGTAAAATAATACCAGCTTCACCAGAACCTCTCCTTGGTCATGAACGAAAGGGAGGGAAGGGTACACGTTTTTCTAAATCTAATTCATCAACTGTGAAATCAAGAAAAGGGACCCTGGAACTGGAAAATCTCAAGTTTGGACCAAAACAGAGTGCCATCCAAGGAGGAAAGCAAAGTAGGAGCGGTTCCAACACTGTGGATCACGTTATTGCAGAGAGAAAAAGGAGACAGGACTTGGCAGAGAAGTTCATAGCACTTTCATCCATTGTTCCGGGTTTGAAGAAGATAGACAAGACTTCTATAGTATGTGAAACTATCAGTTATGTGAAACAACTTCACGTGCGTGTGACGGAGCTAGAACAACCGCGAGACAAGACAGGCAATGAATCACTGGCATACCTCAAGAAGACTAGTCTGTGTGGTGCAAATGAAACAAAGTCTGAGGATTGTTGTAGGCCCAGTGAATTGCTCCCTGATGTTAAAGCAAGAGTGTTGAAGAATGAGGTAATTATTTGGATCCATTGTAAGAAGGAAAATGGCATTGAGCTAAAAATATTGGACCTGCTTGAAAATCTCCAATTGTGTGTCACCGGCAGCAGCGTATTGCCGTTTGGGAATTCAACTCTGAACATTACTATCCTCGCTCAGATGGATGACGCGTACAGAATGACGGTGGTTGATCTAGTGGAAAACGTAAGGCAAGTGTTATTCAATGACGTAAGCAGCAATATTGATTCGTAG 1056 0.4299 MADPTSFPVSHFPVEQSWDTLPLHMEMGDDEKHLFEQCHSSDDEEFLRDILQQPALSFEECQSESFVQNNNFTATTTTNEMACSSQKRLHPSSSSPKTFILSFDKCKIIPASPEPLLGHERKGGKGTRFSKSNSSTVKSRKGTLELENLKFGPKQSAIQGGKQSRSGSNTVDHVIAERKRRQDLAEKFIALSSIVPGLKKIDKTSIVCETISYVKQLHVRVTELEQPRDKTGNESLAYLKKTSLCGANETKSEDCCRPSELLPDVKARVLKNEVIIWIHCKKENGIELKILDLLENLQLCVTGSSVLPFGNSTLNITILAQMDDAYRMTVVDLVENVRQVLFNDVSSNIDS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi372g00025 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Sebi372g00025 351 PANTHER BHLH TRANSCRIPTION FACTOR 56 342 - -
Sebi372g00025 351 MobiDBLite consensus disorder prediction 128 142 - -
Sebi372g00025 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 234 IPR036638 GO:0046983
Sebi372g00025 351 Pfam Helix-loop-helix DNA-binding domain 173 218 IPR011598 GO:0046983
Sebi372g00025 351 MobiDBLite consensus disorder prediction 114 142 - -
Sebi372g00025 351 Gene3D - 161 233 IPR036638 GO:0046983
Sebi372g00025 351 SMART finulus 174 223 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi372g00025 Sebi-Chr372 827815 832716 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi372g00025 164 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.848 1.02e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi372g00025 HLH 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi372g00025 - - aprc:113856039 303.138