Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi372g00018 ATGGAGAGCAACCCCTGGCGCAAATGGTCTTCCGATATGGAAATGGATGATTATGTCAATGAATGCTTGTGCCACACCAACACTTTTGATGAAGAGTTCCTCAGAGATATCCTGCTGCAGCCACAAGATTCCACTGCCCCTGTTATTGGCAGTAGTAGTTCTTTATTATTTGGCCAAACAAGCTTTGAGAGGCCAATTAACACCAACACCAACACCAACAACAACCTTCAGGTGAATAAGAACAACTCATCACCCATCATCTCTCATTCTCAACAACCAGAATTAAAGCCACTAGCCTCTGCTCCTCCAACATCTTTTATACTTTCTTTTGACAAATCCACTGCTTTGTTACCAACTGATCATCACCATGATCATCCTTCCCCTGTTTGGAATAAAGAGGTTTCTCAATCCCAATTGGGAAATAATAATCATCACCACCCCACTGATTCTTTGCCTTTGTCATCATCATCATCAAGGGCCAATCAAGGAACCAAGAAGACTAGAAGTGCTTCTGAGACATTAGATCACATTATGTCAGAGAGAAATAGGAGACAGGAACTCACAAGGAAGTTCATAGCACTTTCAGCCACAATACCTGGCTTGAAGAAGCTGGACAAGGCCCATGTACTAAGAGAAGCTATCAATTACGTGAAACAACTTCAAGAACGTGTAAAAGAGCTAGAAGAAGATATCAAGAAGAACGGTGTGGAATCAGTGATTACCATAACAAGATCTCATCTCTGTATTGAAGATGACACTGCCTTTGGTGAAACCAAAACTGATGAATGCTATGGGCCCAATGAAGCACTCCCTGAGGTTGAAGCTAGAGTCCTAGGGAAGGAAGTGTTAATCAAAATTCACTGTGGGAAGCAAAAGGGTATTCTGCTCAAAATAATGTCCCAGCTTGAAAGTCTTCATCTCTCCATTTCCACTAGCAACGTCTTGCCATTTGGGAATACTCTTGACATCACCATCATTGCTCAGATGGGTGACAACTACAACTTGATAGTGAAGGATCTAGTGAAAAAGCTGAGACTAGTGGCTACTCTGCAGGCATGCGATGTGAAACAATGA 1074 0.4218 MESNPWRKWSSDMEMDDYVNECLCHTNTFDEEFLRDILLQPQDSTAPVIGSSSSLLFGQTSFERPINTNTNTNNNLQVNKNNSSPIISHSQQPELKPLASAPPTSFILSFDKSTALLPTDHHHDHPSPVWNKEVSQSQLGNNNHHHPTDSLPLSSSSSRANQGTKKTRSASETLDHIMSERNRRQELTRKFIALSATIPGLKKLDKAHVLREAINYVKQLQERVKELEEDIKKNGVESVITITRSHLCIEDDTAFGETKTDECYGPNEALPEVEARVLGKEVLIKIHCGKQKGILLKIMSQLESLHLSISTSNVLPFGNTLDITIIAQMGDNYNLIVKDLVKKLRLVATLQACDVKQ 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi372g00018 357 Gene3D - 161 235 IPR036638 GO:0046983
Sebi372g00018 357 MobiDBLite consensus disorder prediction 66 100 - -
Sebi372g00018 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Sebi372g00018 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 237 IPR036638 GO:0046983
Sebi372g00018 357 SMART finulus 177 226 IPR011598 GO:0046983
Sebi372g00018 357 MobiDBLite consensus disorder prediction 130 168 - -
Sebi372g00018 357 MobiDBLite consensus disorder prediction 66 98 - -
Sebi372g00018 357 Coils Coil 210 237 - -
Sebi372g00018 357 PANTHER BHLH TRANSCRIPTION FACTOR 48 348 - -
Sebi372g00018 357 Pfam Helix-loop-helix DNA-binding domain 176 221 IPR011598 GO:0046983
Sebi372g00018 357 MobiDBLite consensus disorder prediction 117 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi372g00018 Sebi-Chr372 526849 530036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi372g00018 103 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 44.355 4.89e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi372g00018 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi372g00018 - - gmx:100809223 387.497