Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi371g00028 ATGGCACTGGCCAAAGACCAAATTCCACATGATTCAAGCATGGGAAACAAGGTTCAAACTTGTGTTTTCAACCACAAATCTGTGCTTGAACAGGAACATGGCTCTCAGAGTACTAATGGACTCAGCAATGATTCAGGTACAAGTATAACCCATTCTCCTCCTCTATGTGGTAGTGACAATGGTTATGTTTATAAGGGAAGAAACTATCAGCTTGAAGAAGCAGAACCTCTTATTAATTTCAAAGAAAGTAGTGGATACAGCAATATCAAGCAAGCTAGTGAATCTTTGCTTAGCTTTCAGCAGAGCAGGTTGGTTCCTAACAACTGTTACTTGAAAGATAGCAGTCAGAAAGAGTACCGTGTTTATGAGAATAATATGCATAAAGGCTATAACCAATGGAATCAGATTAGTCCTAGAAGCACCACAGACTTGCACCTGGTGCAGGATTTCAATTGTTTTCAAACTGCTAGTGGCTATAGCTCCATAGTCAATAGTGCAAAAGAGAAGCAACATGGCCAGAGTTCATATGGGTGGCTCTATTCAGAGCCAATTATGCATGTTGATAGTCTCCAGAACCAGAAGTCAATAATAGAAGAATCAGTCTTGAAAAAACGCCCTGCTATGGGAGAGAATATGAAAGCTGCCAAGAAGCAATGCTCAAGTGAGAGTAAAGCACCAAAACCAAGGTCAAGTACATCTAAGGATCCTCAAAGTGTGGCTGCCAAGAATAGAAGAGAGAGGATAAGTGAGCGGTTGAAGATACTACAGGAATTGGTGCCTAATGGCTCCAAGGTTGATTTGGTTACCATGTTGGAGAAAGCAATTAGTTATGTAAAGTTTCTTCAATTGCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCTGTCCAAGGTGGAAAATCTCCTGATATTTCTCAAGTAAAAGAAGCCATTGATGCCATTCTTTCATCCCAGAGAGACAGAAGTTCATGCTCAAAGTAG 981 0.4057 MALAKDQIPHDSSMGNKVQTCVFNHKSVLEQEHGSQSTNGLSNDSGTSITHSPPLCGSDNGYVYKGRNYQLEEAEPLINFKESSGYSNIKQASESLLSFQQSRLVPNNCYLKDSSQKEYRVYENNMHKGYNQWNQISPRSTTDLHLVQDFNCFQTASGYSSIVNSAKEKQHGQSSYGWLYSEPIMHVDSLQNQKSIIEESVLKKRPAMGENMKAAKKQCSSESKAPKPRSSTSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKSPDISQVKEAIDAILSSQRDRSSCSK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi371g00028 326 Gene3D - 227 289 IPR036638 GO:0046983
Sebi371g00028 326 SMART finulus 238 287 IPR011598 GO:0046983
Sebi371g00028 326 MobiDBLite consensus disorder prediction 224 238 - -
Sebi371g00028 326 MobiDBLite consensus disorder prediction 32 54 - -
Sebi371g00028 326 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 88 290 IPR045843 GO:0003700|GO:0006355
Sebi371g00028 326 CDD bHLH_AtIND_like 233 295 - -
Sebi371g00028 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 281 IPR011598 GO:0046983
Sebi371g00028 326 Pfam Helix-loop-helix DNA-binding domain 242 282 IPR011598 GO:0046983
Sebi371g00028 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 291 IPR036638 GO:0046983
Sebi371g00028 326 FunFam Transcription factor bHLH83 230 289 - -
Sebi371g00028 326 MobiDBLite consensus disorder prediction 209 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi371g00028 Sebi-Chr371 863333 864857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi371g00028 61 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 45.588 1.29e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi371g00028 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi371g00028 - - gmx:100810010 480.33