Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi371g00007 ATGGCTTCACCTGTGGGGCATGTTTCGAGATCAAGTGCACCGATGATCCTCAATGGTGCCATGCCGGTAACCCTTCCATCTTCATCACCGCCACCAACTTCTGCCTCCAAACTACGCTCTTCCAAGCGACAATGGTGGATGGTGCAACCCTCCAAGGCCCCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCCACTACCGCGCCGGAATCGTCCCGTCTCTTATCGCCGGGTGCCGTGCCGGAAGCGTGGAGGGATGAGGTTCACGATCAACGGGTTCCGTTACTTCAACTTGGTTTTGATCACGAACGTGGCGGGTGCAGGGGATATCGTGAGGGCGAGCGTGAAAGGGTCAAGGAGTGGGTGGATGAGCATGAGCCGTAACTGGGGGCAGAACTGGCAGTCAAACGCGGTTCTGGTTGGTCAGTCACTGTCCTTTAGGGTGACAGGCAGTGACCGGCGCACCTCCACCTCGTGGAACATTGTCCCAGCTAATTGGCAATTTGGGCAAACCTTCATGGGGAAGAACTTCAGGGTCTAA 546 0.5659 MASPVGHVSRSSAPMILNGAMPVTLPSSSPPPTSASKLRSSKRQWWMVQPSKAPLRPRHAHVPQDRPLPRRNRPVSYRRVPCRKRGGMRFTINGFRYFNLVLITNVAGAGDIVRASVKGSRSGWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFMGKNFRV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi371g00007 181 Pfam Expansin C-terminal domain 88 165 IPR007117 -
Sebi371g00007 181 SUPERFAMILY PHL pollen allergen 84 175 IPR036749 -
Sebi371g00007 181 FunFam Expansin 87 179 - -
Sebi371g00007 181 PRINTS Expansin/Lol pI family signature 162 176 IPR007118 GO:0005576
Sebi371g00007 181 PRINTS Expansin/Lol pI family signature 124 138 IPR007118 GO:0005576
Sebi371g00007 181 PRINTS Expansin/Lol pI family signature 70 86 IPR007118 GO:0005576
Sebi371g00007 181 Gene3D - 88 179 IPR036749 -
Sebi371g00007 181 MobiDBLite consensus disorder prediction 30 47 - -
Sebi371g00007 181 PANTHER EXPANSIN-A15 74 179 IPR002963 GO:0009664
Sebi371g00007 181 MobiDBLite consensus disorder prediction 19 73 - -
Sebi371g00007 181 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 97 176 IPR007117 -
Sebi371g00007 181 MobiDBLite consensus disorder prediction 58 72 - -
Sebi371g00007 181 PRINTS Expansin signature 98 119 IPR002963 GO:0009664
Sebi371g00007 181 PRINTS Expansin signature 162 178 IPR002963 GO:0009664
Sebi371g00007 181 PRINTS Expansin signature 133 154 IPR002963 GO:0009664
Sebi371g00007 181 PRINTS Expansin signature 21 31 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi371g00007 Sebi-Chr371 369386 370408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi371g00007 74 181 Expansin Gene Family AT2G39700 92.593 7.18e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi371g00007 - - cit:102623096 218.779