Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi371g00005 ATGGTGTTGAAGAAGAGGGTAGATTATGGATTCAATGGCTTTCGAGTCCCTGTTATTCCTAAAGCTCCTAGATCTGCAAGAAGGAGGATTTCATTCCACAATGCAGCTGAGGATGGTCAAGCTTGTGCTTTTGAACTATTGGCATCCTTAGCAGGCAAGTTGTTGCAGGAGGGTGAAAGTTCTGCTTCTAGCAATGCATCTGAAGGAAATCATCAGCCTGCCTTTAGCCAAGGTTTCGTTGAGCAAGATAGACAGGATGAAGTTAAACCATTGATGACAGAGGGAATTCATCAAGGAAGTTGTGCAGAGAGTATTTTTAAGACTGAGGTAGCCTCACAAAACAGTACTCAGAAACCTCTTTTGTGTGCCAAGACTGATTGTTCAGTAGGACACATTTCAGTTAATAATAATTCTGACTCTTCAGAAAAGGTTGATGCTGATGTGAAGACTGAAACTTTTGAATGGGATAATAAAATTGGGCATTATTCTAATAGATTAGTAGAAGTACCTGAAAATTTTAGGAATTCTTGTGATGGTAAAATAAAGAGTGGATTTAGAGTGGAACAGGAGGCTGGCAGTTCAGACTTTCAAGGATCAACTTTGGCTAATAAATGTGGTTTGAAGGACCAATTAGATTTGTATATGTCGCCTGCACTAATTGACTCAAAAGATGATGTTAAATATCCACTTCATAGGAAATCTTTTCCCAATGCTTCCTTTTCCAAGCATGGGAATGGTATTAAGTTAGATTTTAGAGATGATGACGAAAACTTTTCAAGGTGCAAAAAATTTTGCACAAAGTCAAAGGCTTTTAGGTCTCCACGACGCATTGCACACCGAAGAATCAAGAATCTGCTGTCTTCCAAATACTGGAAGGTTGGTCCAAAGCTGAAGGAGTGTGATCTTTCAATATCTGATCTAGGAGTACCACTTTATCGTAAGAGGAAGACTTGTTACAGTTCTGAAAGATCTCAGCGCAGCACTATTGTCAAGAGGAGAAAATTCTTTGACCGAGTTTCAGGGGTAACCTCTGATGGAGGATTCAGCAGTGAGAGTGTGTCTAATTCACCTCAGAAAGGGACAGATGGAGACAACCCTGGCTCATCTGCAAAACTGCATGTACCTAAGGATTCTCATGTGAAATTTAGCATTAAGTCATTTAGGATACCAGAGCTTTATGTTGAGGTTCCCGAGACTGCAACTGTTGGTTCTCTAAAGAGGACAGTCATGGAGGCAGTGATGGCTATACTCGGAGGTGATGTGCATGTTGGTGTTGTTCTTCAGGGGAAAAAAGTTAGAGAGGATAATAGAACACTTGTGCAGACTGGTATATCTTGTAAAGAAAATCTGGATACCCTCAGTTTCACATTAGAGCCCAGCTCTCTACTAGCTTCTCCAGCTGTTTGTGTTGGTGATCCTTCTTCTCAATGTGAAACATCCCAACCCACTAGGCCCCCAGAAACTCATGTCTTAAATTCAGCAATTACTGATACCTTGCATGACCCTTCCTTGCTGACAAATCCGCTGACAAATCCGGTCAACCCAGTTGAGAGTAACCACGACTCTACTTCTTCCCCAACTGACACTATAGTTGACAATATAACACCAGATTCCAAAGCACTAGTTGCTGTTCCACCTAGCCCAGAAGCATTAGCTGTGGTTCCTGTGAGTCAGAAAACCAAGCGCTCCGAGTTTGTACAGCGCCGAACCAGGAGACCATTCTCTGTGTCTGAGGTAGAAGCACTTGTTGAGGCAGTTGAAGAACTTGGAACTGGAAGGTGGCGTGATGTCAAGCTGCGAGCTTTTGAGAATGCAGATCATAGGACTTATGTAGACTTAAAGGATAAGTGGAAAACATTAGTGCACACTGCAAGAATCTCCCCTCAGCAAAGGAGAGGAGAGCCAGTGCCTCAGGAACTCTTGGACAGAGTTTTGGCTGCTCATGCTTACTGGTCTCAGCACCAAGCCAAGCAACATGGTAATGGCAAGCATCAAGCTGGACCTGGAACCTTGAAGATTGCAGAAGCCACAGCTGAAGGAACTTGTGCATTGAAGGTGTCCAATGTGTAG 2070 0.428 MVLKKRVDYGFNGFRVPVIPKAPRSARRRISFHNAAEDGQACAFELLASLAGKLLQEGESSASSNASEGNHQPAFSQGFVEQDRQDEVKPLMTEGIHQGSCAESIFKTEVASQNSTQKPLLCAKTDCSVGHISVNNNSDSSEKVDADVKTETFEWDNKIGHYSNRLVEVPENFRNSCDGKIKSGFRVEQEAGSSDFQGSTLANKCGLKDQLDLYMSPALIDSKDDVKYPLHRKSFPNASFSKHGNGIKLDFRDDDENFSRCKKFCTKSKAFRSPRRIAHRRIKNLLSSKYWKVGPKLKECDLSISDLGVPLYRKRKTCYSSERSQRSTIVKRRKFFDRVSGVTSDGGFSSESVSNSPQKGTDGDNPGSSAKLHVPKDSHVKFSIKSFRIPELYVEVPETATVGSLKRTVMEAVMAILGGDVHVGVVLQGKKVREDNRTLVQTGISCKENLDTLSFTLEPSSLLASPAVCVGDPSSQCETSQPTRPPETHVLNSAITDTLHDPSLLTNPLTNPVNPVESNHDSTSSPTDTIVDNITPDSKALVAVPPSPEALAVVPVSQKTKRSEFVQRRTRRPFSVSEVEALVEAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQHQAKQHGNGKHQAGPGTLKIAEATAEGTCALKVSNV 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi371g00005 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 567 625 IPR017930 -
Sebi371g00005 689 MobiDBLite consensus disorder prediction 508 527 - -
Sebi371g00005 689 FunFam Telomere repeat-binding protein 1 560 663 - -
Sebi371g00005 689 MobiDBLite consensus disorder prediction 343 373 - -
Sebi371g00005 689 SUPERFAMILY Homeodomain-like 572 653 IPR009057 -
Sebi371g00005 689 Gene3D - 559 663 - -
Sebi371g00005 689 CDD SANT_TRF 572 622 - -
Sebi371g00005 689 SMART sant 570 623 IPR001005 -
Sebi371g00005 689 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 660 IPR031105 -
Sebi371g00005 689 MobiDBLite consensus disorder prediction 343 365 - -
Sebi371g00005 689 ProSiteProfiles Myb-like domain profile. 566 621 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi371g00005 Sebi-Chr371 337022 340354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi371g00005 470 621 Single Myb Histone (SMH) Gene Family AT1G15720 30.864 7.98e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi371g00005 - - gmx:100795471 1037.71