Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi370g00069 ATGGCCGTGAATCTGACACAAGGGGCGATCGAGACTATGTGCAGCGACAACTTCTCTTCGGAGGAGTTGCAGCCGGTACTGCAGGTTATCGACTTGAAGTTGTTGCAGTCGCAGCAAAACAGCGCCGTCGAGAGGTACCGCCTTGTGATGTCTGACGGTAAGTATTATCAGCAAGGGATGCTCGCCACGCAGAAGAACGAGTTGGTCCGTTCTCGAAGCTTGCAGAAAGGTTCCGTTGTTAGGCTCACTCAGTTCATCTGCAACGTTGTCCAGGGCCGCAATTCTGACTCTGTAAGATATGGTGCTGCTAATGCTCCTTCTACTTATGGTAGTCCACATGCAAGTGGCTTGACTGCTAGACCAAATATGTCCGGGCCTTCTCCAGATCATTCAAAAATGAATCTTCCTTCTAACAGTGTTCATTCTGGCAGTCCTGACTCTGTAAGATATGATGCTTCTAATGCTCCTCCTACTTATTCTAAAGCAAAGCCTGGTGGGAGTTTGCCTAGATCAGCACCATTCAATGGGTCTTATGGTGATCAGAACACTGGCTTCCGCAATCCCCAGTATGAGGCTTCAAGGCCAATGCAAAATTCTTATGCCCATCCACCTCAGCCTATGTACCGACAGCCATCTCCAATGTACACTAACAGAGGTCCTATGGGAAGAAATGAAGCTCCCCTCAGGATACTTCCAATTGCTGCATTGAATCCATACCAGAATACGTGGGCAATTAAAGCCAGAGTAACGGCTAAGGGAGAACTCAGACACTACAATAATGCCCGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTGGATTCTCATGGTGGTGAAATTCGGGCAACTTGCTTTAATGCTGTGGCTGATCAATTTTATAATGTAATTGAAGCTGGTAAAATCTATCTGGTTTCCAGGGGAAGCATAAAGCCAGCTCAAAAGAATTTCAATCACCTCCGTAATGATCAAGAGATAACTCTTGATATTACTTCGATTATACAGCCGTGCCTTGATGATGATAACTCAATTCCAAAGCAGACATTTTCTTTTCGTCCCATTAGCGAAATTGAAAATATGGAAAACAACAGCATTTTGGATTTGATTGGTGTGGTGTCTTCTATTAGTCCTACAACTTCAATCATGAGAAAAAATGGCACTGAAACACAGAAGAGAACTCTCCAGTTGAAAGACAAGTCTGGCCGAAGCGTTGAGTTAACTTTATGGGGAAATTTTTGCAATGTAGAAGGACAAAGACTGCAAACTATTTGCGATTCTGGGACATTTCCACTTTTGGCTGTAAAAGCTGCTAGAGTAAATGATTTCAATGGAAAATCAGTTGGGACCATAGCCTCCAGCCAGTTATTTGTAGAACCTGATTTTGCAGAGGCTTGTACACTCAGAGAATGGTTTGACAAGGAAGGGAAGAATGTCCCAACTCTCTCTATTTCCAGAGAAGCATCTAGTATTGGTAAAACTGATGTGCGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTATCTGTGCAAGTGTTTCATTCATTAAAGTTGATAATTTCTGCTACACAGCTTGTCCTATCATGATAGGAGATAGGCAATGCAACAAAAAGGTTACCAATAATGGAGATGGGAAATGGCGTTGTGACAGGTGTGATCAGTCTGTTGATGCTTGTGATTATAGGTACATTCTGCAAATGCAGATACAAGATCACACTGGCGTAACATGGGTTACTGCTTTCCAGGAGGGTGGTGAGGAGATCATGGGTCTACCTGCAAAAGATTTGTATTATCTGAAATTCGAAGAACAAGATGATGAAAAATTTGCAGAAATCATCCGTAAGGTTCTCTTCAATAAATATGTGTTCAAGTTAAAAGTTAAGGAGGAAACATTCAGTGATGAACAGCGTGTTAAGTCAACGGTAGTAAAAGCAGAGAAGTCTGAGAAAGCAGAAGGTGCCAGTGCCACTCCTAACTCTGTCATCAATAATACTGGACTGGGGAGCGTTGGATCTGGACAAGCTATGCCACCTATTTATAATCCTATAAAGAGCAACACTAATGCCAATAGAGATTATGGGATGCCGGCAAATCAAGTGGGTCAATATGGAAACCAATATAGCAGTTCTTTTGGTTCATCAGGGGCTCCTGGTTCATACATGTCATGTAACAACTGTGGAGGCTCTGGTCATAGCTCTGTCCTATGCCCAAATACTACAAATCGACCTGGACAGTTTGCAGGAGGCTCCTATGGAAACAGGGTGTCTGCTGCATCAAGTGGTGCCTCTGGTGAATGCTTTAAGTGCCATCAATCTGGCCACTGGGCAAAAGACTGTCCTGGTATTAGTGCAGCACCCCCAGCGTATGGAAGCAGTAATGCAATGCAAGGAAGATATGGGGTTGCTCAAAGGCAACAATTTGGAGGATACTGA 2457 0.4339 MAVNLTQGAIETMCSDNFSSEELQPVLQVIDLKLLQSQQNSAVERYRLVMSDGKYYQQGMLATQKNELVRSRSLQKGSVVRLTQFICNVVQGRNSDSVRYGAANAPSTYGSPHASGLTARPNMSGPSPDHSKMNLPSNSVHSGSPDSVRYDASNAPPTYSKAKPGGSLPRSAPFNGSYGDQNTGFRNPQYEASRPMQNSYAHPPQPMYRQPSPMYTNRGPMGRNEAPLRILPIAALNPYQNTWAIKARVTAKGELRHYNNARGDGKVFSFDLLDSHGGEIRATCFNAVADQFYNVIEAGKIYLVSRGSIKPAQKNFNHLRNDQEITLDITSIIQPCLDDDNSIPKQTFSFRPISEIENMENNSILDLIGVVSSISPTTSIMRKNGTETQKRTLQLKDKSGRSVELTLWGNFCNVEGQRLQTICDSGTFPLLAVKAARVNDFNGKSVGTIASSQLFVEPDFAEACTLREWFDKEGKNVPTLSISREASSIGKTDVRKTISQIKDEKLGTSEKPDWISICASVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSVDACDYRYILQMQIQDHTGVTWVTAFQEGGEEIMGLPAKDLYYLKFEEQDDEKFAEIIRKVLFNKYVFKLKVKEETFSDEQRVKSTVVKAEKSEKAEGASATPNSVINNTGLGSVGSGQAMPPIYNPIKSNTNANRDYGMPANQVGQYGNQYSSSFGSSGAPGSYMSCNNCGGSGHSSVLCPNTTNRPGQFAGGSYGNRVSAASSGASGECFKCHQSGHWAKDCPGISAAPPAYGSSNAMQGRYGVAQRQQFGGY 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi370g00069 818 NCBIfam replication factor-a protein 1 (rpa1) 205 659 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi370g00069 818 SUPERFAMILY Nucleic acid-binding proteins 348 477 IPR012340 -
Sebi370g00069 818 FunFam Replication protein A subunit 342 480 - -
Sebi370g00069 818 MobiDBLite consensus disorder prediction 661 676 - -
Sebi370g00069 818 Pfam Replication protein A OB domain 353 456 IPR031657 -
Sebi370g00069 818 FunFam Replication protein A subunit 481 669 - -
Sebi370g00069 818 CDD RPA1N 8 94 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sebi370g00069 818 CDD RPA1_DBD_A 232 334 - -
Sebi370g00069 818 SUPERFAMILY Nucleic acid-binding proteins 230 343 IPR012340 -
Sebi370g00069 818 FunFam Replication protein A subunit 229 339 - -
Sebi370g00069 818 Gene3D - 692 793 - -
Sebi370g00069 818 SUPERFAMILY Nucleic acid-binding proteins 495 655 IPR012340 -
Sebi370g00069 818 CDD RPA1_DBD_B 364 471 - -
Sebi370g00069 818 Gene3D - 481 667 IPR012340 -
Sebi370g00069 818 Pfam Replication factor-A protein 1, N-terminal domain 5 92 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sebi370g00069 818 SMART c2hcfinal6 773 789 IPR001878 GO:0003676|GO:0008270
Sebi370g00069 818 SMART c2hcfinal6 730 746 IPR001878 GO:0003676|GO:0008270
Sebi370g00069 818 SUPERFAMILY Retrovirus zinc finger-like domains 759 791 IPR036875 GO:0003676|GO:0008270
Sebi370g00069 818 FunFam Replication protein A subunit 4 95 - -
Sebi370g00069 818 Pfam Replication factor-A C terminal domain 514 659 IPR013955 -
Sebi370g00069 818 MobiDBLite consensus disorder prediction 106 154 - -
Sebi370g00069 818 Pfam Zinc knuckle 773 788 IPR001878 GO:0003676|GO:0008270
Sebi370g00069 818 Gene3D - 3 100 IPR012340 -
Sebi370g00069 818 ProSiteProfiles Zinc finger CCHC-type profile. 774 788 IPR001878 GO:0003676|GO:0008270
Sebi370g00069 818 CDD RPA1_DBD_C 498 655 IPR047192 -
Sebi370g00069 818 MobiDBLite consensus disorder prediction 106 183 - -
Sebi370g00069 818 MobiDBLite consensus disorder prediction 653 676 - -
Sebi370g00069 818 SUPERFAMILY Retrovirus zinc finger-like domains 722 789 IPR036875 GO:0003676|GO:0008270
Sebi370g00069 818 PANTHER REPLICATION FACTOR A 1, RFA1 243 650 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi370g00069 818 Gene3D - 228 339 IPR012340 -
Sebi370g00069 818 SUPERFAMILY Nucleic acid-binding proteins 1 93 IPR012340 -
Sebi370g00069 818 Pfam OB-fold nucleic acid binding domain 244 332 IPR004365 GO:0003676
Sebi370g00069 818 Gene3D - 342 480 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi370g00069 Sebi-Chr370 959284 962621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi370g00069 1 758 Core DNA Replication Machinery Family AT5G45400 50.116 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi370g00069 K07466 - gmx:100778597 1159.44