Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi370g00063 ATGGAGTCCAGTGAGAATGAAAGCGTGTCAGTTCGAGAGGTCCATGCAAATGGAAGCCGCGTAGTAACATCAGAAATTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAGGCAGAATCTGCATTGCGAGAAGGGTTGTCACTCAATTTTGAGGAAGCAAGGGCTCTTCTTGGGAAGTTGGAGTATCAGAGAGGTAATGTAGAAGCTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGATTGCAACCCTCTTTTTCTGACAAAGCACAAGTCAAAAAAGGCCGCACCCGTGCTGAATCACCTTCTTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAGGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTGGGGAAATATACAGAAGCTGCTAGTGACTGTAAAAGTATTCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTGATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTGGCTATGATGAGGCAATCTCAGCTTATAGGCGTGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAATCGTTTGTTGTTTTCTTGCTGTACAGTGGGGTAGAGGCAAGTCCACCTAGCTTAGCAGTTCAGATTGAGGGGGCTTATGTGCCTAAAAATAATCTTGAAGAGGCAATTCTGCTCTTACTGATTCTTATAAGAAAGTTTTGCCTTGGTAAGGCAGAATGGGACCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTGTATGTAGCCAAACTTCTATTTTAGCAAAGCAATTTGAAGACTTGATGCCTGGAGTATACCACCGTATTGATCGCTGGAATTCTTTAGCTTTGTGTTTTAGTGGAGCTGGACAAAATGACAGTGCTTTGAATCTGCTTAGGAAGTCTTTGCACAAACATGAACGACCAGATGACCTTACATCATTATTGTTAGCTGCTAGGATCTGCAGTGAGGACCCGTATCTTGCTGCTGAGGGAGTTGGCCATGCACAAAGGGCAATCAGTAATGCTCATGGCCTGAACGAGCATTTAAAAGGTGTTGCTCTTCGGATGTTGGGACTTTGTCTAGGAAAGCAAGCTAAGGTTGCATCTTCTGACTTTGAGAGGTCTCGCCTTCAGTCCAAAGCATTGGAATCATTGGAGGAGGCAATTAGATTGGAACGAAACAATTCTGATCTGATTTTTGAGTTGGCTGTTCAATATGCAGAGCATCGAAATTTGACTGCTGCGCTGCGCTCTGCAAGGCATTTCTTTAATGAAACCGGTGGCTCTATATTGAAAGCTTGGATATTGCTTGCTCTGATTTTGTCTGCACAACAAAAGTATCTGGAAGCTGAAATGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGGGCCACTGCTTAGGCTGAAAGCAAAGCTAAAGATCTCACAATCACGACCTATGGATGCTATTGAAACTTATCGCTACCTTCTTGCATTGGTTCAAGCCCAAAAGAAATCCTTTGGGTCTTTCCCAATGAGTTCAAAGAACAAGAGGGAAAGACAGATAAAGGACACAAGTGTTTTGTTTGAAGGACGTGGTCAAAGTCAAGAAGCTCTCAATGCTGCTATTAATTCTGTCCTAATTGAACCAAACTATGTTCCAAGCAAGATCTTGATGGGTGCTTTGGTTCAGAAAATTGACTCAAAGGCATTGCCTGCTGCAAGAAGCATGCTGTCTGATGCACTTAGAGTAGAACCCACCAACCGCAAGGCTTGGTATTACTTGGGATTGGTTCACAAGCAAGATGGCCGAATGGCTGATGCTGCTGACTGCTTCCAAGCAGCTTACATGCTTGAAGAATCTGATCCCATTGAAAGTTTCAGCACTATACTTTGA 1968 0.435 MESSENESVSVREVHANGSRVVTSEIEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEAALRVFDGIDLQAAIQRLQPSFSDKAQVKKGRTRAESPSSVSQHAASLVLEAIYLKAKSLQKLGKYTEAASDCKSILDAVEKIFYQGIPDIQVDNKLQEIVSHAVELLPELWKQAGGYDEAISAYRRALLSQWNLDNDCCARIQKSFVVFLLYSGVEASPPSLAVQIEGAYVPKNNLEEAILLLLILIRKFCLGKAEWDPSVMEHLTFALSVCSQTSILAKQFEDLMPGVYHRIDRWNSLALCFSGAGQNDSALNLLRKSLHKHERPDDLTSLLLAARICSEDPYLAAEGVGHAQRAISNAHGLNEHLKGVALRMLGLCLGKQAKVASSDFERSRLQSKALESLEEAIRLERNNSDLIFELAVQYAEHRNLTAALRSARHFFNETGGSILKAWILLALILSAQQKYLEAEMVTDAALDQTARWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQKKSFGSFPMSSKNKRERQIKDTSVLFEGRGQSQEALNAAINSVLIEPNYVPSKILMGALVQKIDSKALPAARSMLSDALRVEPTNRKAWYYLGLVHKQDGRMADAADCFQAAYMLEESDPIESFSTIL 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi370g00063 655 SUPERFAMILY TPR-like 118 443 IPR011990 GO:0005515
Sebi370g00063 655 Gene3D Tetratricopeptide repeat domain 539 655 IPR011990 GO:0005515
Sebi370g00063 655 SUPERFAMILY TPR-like 49 198 IPR011990 GO:0005515
Sebi370g00063 655 Gene3D Tetratricopeptide repeat domain 237 538 IPR011990 GO:0005515
Sebi370g00063 655 Pfam Tetratricopeptide repeat 596 640 - -
Sebi370g00063 655 SMART tpr_5 378 422 IPR019734 GO:0005515
Sebi370g00063 655 SMART tpr_5 302 335 IPR019734 GO:0005515
Sebi370g00063 655 SMART tpr_5 458 491 IPR019734 GO:0005515
Sebi370g00063 655 SMART tpr_5 118 151 IPR019734 GO:0005515
Sebi370g00063 655 SMART tpr_5 613 646 IPR019734 GO:0005515
Sebi370g00063 655 PANTHER PROTEIN NPG1 5 544 IPR043376 -
Sebi370g00063 655 Gene3D Tetratricopeptide repeat domain 15 202 IPR011990 GO:0005515
Sebi370g00063 655 SUPERFAMILY TPR-like 406 643 IPR011990 GO:0005515
Sebi370g00063 655 ProSiteProfiles TPR repeat profile. 613 646 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi370g00063 Sebi-Chr370 914441 919274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi370g00063 3 655 Calmodulin-binding Proteins AT2G43040 67.098 0.0 898