Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi370g00057 ATGTCCCTCCTCAGCAGATTCTTCTACAAGAGACCCCCAGATGGCTTGCTCGAATTCGTCGACAGAGTATACGAAATTTTTCCTCAAAATTTCGTGTTTATTTCTCCTACCCACGCAGTCTTTGATTCTTGCTTCTCCACCGAAGCATTACCCGACGGAATGTACCAGCTTTACCTTCACGAAATCGTCACTGAGTTGCACGAAGAGTTTCCAGAATCTTCCTTTCTGGCCTTCAATTTTCGCGACGGCGAGAAGCGTAGCAACTTGGCGGAGATCCTATGCGAAAGGGTACACAGTGGTGAACGCAGGACCCTTGAAATTGTGCATAGAGAAGCACCTAAGGGTTTGTTGCAGCTCTTGTCACCCTTGAATCCTTTGCCTTCTCAGCTTCGTTATATTCAGTATGTGGCAAGGAGGAACATTGCCCCTGAGTGGCCCCCACCTGAGCGGGCTCTGTCTCTGGATTGTGTCATTCTCAGAGGAATTCCTAGTTTTGATTCCCAGAATGGATGCAGGCCCATGTTCAGGATTTTTGGGAGGAATCTGCTCACAAAGGGTGGGCTTTCCACCCAGATGATTTATTCCATGCACAAGAAGAAGAAGATCTTGAGGCATTACCGCCAGGCGGATTGTGATGTGATTAAGATTGATATTCAATGTTTAGTGCAAGGAGATGTGGTGTTGGAGTGTGTCCATTTGGATTTGGATCCAGAAAGGGAAGTCATGATGTTTCGTGTGATGTTTAACACTGCATTTATTCGATCCAACATACTGATGCTGAACACTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGGTATCCAAAAGGATTCCGGGCTGAGGTTTTGTTTGGGGAGGTTGAAACCATAAGTCCCCCAAGGGCTCCAACAACTATTTTAAATGGTGAGGAGAAAGGTGGATTGCCCATTGAAGCATTTTCAAGAGTTCAAGAACTTTTTAGTGGTGTAGAATGGGTTGACAGTGGTGATGCTGCTGCTTGGCTGCTTAAACAACTTACAGTCTTAAATGATGCAAAAGAGTTTTCAAGGTTGCAAGGTAAAGGAAGCTGGTATTCATCACCTGCTGACTCTGACGATGAAAATAATGAATCAAGCACTGCTGATAGTTCAGATGAGGCCTTTGATGTTATTCCCAAGTTTTCTACTGATCCTTCGAAATTATTGACATCTGACACTCCCTATTCAATCCATTTAGCTTTTGAGGATAATGGTGGAAATAACACAAATCTCACTTCAAGAACACCTGATCAGTCATTAACTGATAATGTTTCACCACCTCATCATGCTCCAAGACCTGTACGAACAAGTTCAGTCCCACCACCCCCACCTCCACCTCCTCCAGGTTCTGTAAGAACAGGTTCAGCCCCACCACCACCACCTCCACCTCCTCCAGGTCCTGCACGAACAGGTTCAGCTCCACCACCACCACCACCACCACCTCCACCTCCTCCCGGTCCTGCACGAACAGGTTCAGCTCCACCCCCACCCCCTCCCCCTCCTCCAGGTCCTATACGAACAGGTCCAGCGACGCCACCTCCACCTCCACCTCCTCCAGGTCCTACTCGAACAGGTTCAGTCCCACCACCTCCACCTCCTCCAGGTGTACGAACAGGTCCAACTCCCCCACCTCCCCCACCAGCTCCTCCAGGATCTGTGCGATTGGGTTCAGCTCCACCGGCACCAAAGCCTCCAAGCGCTCCTCCTCCTCCACCTGGTCGTGGTTTATCATCAGTGCCACCTCCACCTACTGCAGCCAGGGCCCCTGGTGTGCCACCACCACCAGGCAAAGCTTCAGCAACAACAAATGTTGGAAGAGGTCGTGGTACTGCTGGGGTTGCTAACGCTCCTAAGAAAACTTTGTTGAAGCCTCTTCATTGGGTGAAAGTTGCTCGAGCAACAAAAGGGAGTCTGTGGGCTGATTCACAGAAACAAGACAGTGAATCAAGGGCCCCTGAAATAGATATTTCAGAACTTGAGAGCTTGTTTTCAGCAGCATCTGCTTCTGATGGGAGCAGTACTAAAGGGGGAGGTCGACGTGGTACTAATATTAACAAACCTGAGAAAGTACAATTGTTTTCATGGGTGTATATGGTACCTCAGTATGATTATTTGCTGTCTAAACCTAATCATGCAGACACTGTTGACTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTATAAAGCCCAATGGTATCGATGTATCCATGTATCTCATCAGTGTTGTTGATATTGATGTTAAGATATATGGACGAAATTTTCTGGCATTGGATTCTTCTGTTCTGGATATTGATCAGGTTGAAAATCTCATCAAGTTCTGTCCCACAAAGGAAGAGATGGAGATGTTGAAGAATTATTCAGGGAACAAGGAAATGCTTGGAAGGTGTGAGCAGGTTCCACGAGTAGAATCCAAATTAAGGGTGTTTGCTTTTAAAATCACCTTTTCTGCTCAGGTGAGCGATTTAAGGTTGAATTTGAATACAATCAATGATGCAGCCAGAGAGGTGAAAGAATCTGTAAAATTGCGTCAAATAATGCAGACTATTCTTACTTTGGGCAATGCCTTGAATCAGGGAACGGCACGGGGATCAGCAGTAGGGTTCAAATTGGATAGCCTTCTTAAATTATCTGATACTCGTGCTAGAAATAACAAAATGACTTTAATGCATTATTTGTGTAAGCTTCTTGCTGAGAAATTGCCAGAATTGCTAGATTTTGACAAGGATCTTGTCCATTTGGAAGCAGCTTCTAAGATCCAACTAAAAGCATTAGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTCACTGCTTCTGAAAATGATGGTACTATATCTTTAGGATTTCGCAAGGTGTTGAAGAATTTTCTTGATATTGCCGAAGCTGATGTGAGGTCACTTATATCGTTGTATTCTGAAGTGGGAAGAAATGCAGATTCTTTGTCGCAGTACTTTGGGGAGGATCCAGCTAGGTGCCCCTTTGAACAAGTGACACAAATACTTGTTGTCTTTGTTAAGATGTTCAACAAGTCAAGGGAGGAGAATGAAAGGCTAGCAGATGCTGAAAAAAAGAAATTAGAGAAAGAAGCCATGAAGGAGAAGACAGCAAATAACATGCATTCCAAAAGAGATATTGTTCGGTAG 3216 0.4487 MSLLSRFFYKRPPDGLLEFVDRVYEIFPQNFVFISPTHAVFDSCFSTEALPDGMYQLYLHEIVTELHEEFPESSFLAFNFRDGEKRSNLAEILCERVHSGERRTLEIVHREAPKGLLQLLSPLNPLPSQLRYIQYVARRNIAPEWPPPERALSLDCVILRGIPSFDSQNGCRPMFRIFGRNLLTKGGLSTQMIYSMHKKKKILRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNTENLDILWDSKERYPKGFRAEVLFGEVETISPPRAPTTILNGEEKGGLPIEAFSRVQELFSGVEWVDSGDAAAWLLKQLTVLNDAKEFSRLQGKGSWYSSPADSDDENNESSTADSSDEAFDVIPKFSTDPSKLLTSDTPYSIHLAFEDNGGNNTNLTSRTPDQSLTDNVSPPHHAPRPVRTSSVPPPPPPPPPGSVRTGSAPPPPPPPPPGPARTGSAPPPPPPPPPPPPGPARTGSAPPPPPPPPPGPIRTGPATPPPPPPPPGPTRTGSVPPPPPPPGVRTGPTPPPPPPAPPGSVRLGSAPPAPKPPSAPPPPPGRGLSSVPPPPTAARAPGVPPPPGKASATTNVGRGRGTAGVANAPKKTLLKPLHWVKVARATKGSLWADSQKQDSESRAPEIDISELESLFSAASASDGSSTKGGGRRGTNINKPEKVQLFSWVYMVPQYDYLLSKPNHADTVDLRRAYNCEIMLSKIKIPLPDMLIKPNGIDVSMYLISVVDIDVKIYGRNFLALDSSVLDIDQVENLIKFCPTKEEMEMLKNYSGNKEMLGRCEQVPRVESKLRVFAFKITFSAQVSDLRLNLNTINDAAREVKESVKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKLPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGTISLGFRKVLKNFLDIAEADVRSLISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILVVFVKMFNKSREENERLADAEKKKLEKEAMKEKTANNMHSKRDIVR 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi370g00057 1071 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 149 288 IPR035892 -
Sebi370g00057 1071 Coils Coil 1033 1062 - -
Sebi370g00057 1071 SMART PTEN_C2_2 147 287 IPR014020 -
Sebi370g00057 1071 MobiDBLite consensus disorder prediction 354 382 - -
Sebi370g00057 1071 ProSiteProfiles C2 tensin-type domain profile. 149 288 IPR014020 -
Sebi370g00057 1071 Pfam C2 domain of PTEN tumour-suppressor protein 148 286 IPR014020 -
Sebi370g00057 1071 SMART it6_source 417 1071 IPR015425 -
Sebi370g00057 1071 SUPERFAMILY Formin homology 2 domain (FH2 domain) 723 1062 - -
Sebi370g00057 1071 MobiDBLite consensus disorder prediction 1040 1071 - -
Sebi370g00057 1071 MobiDBLite consensus disorder prediction 672 687 - -
Sebi370g00057 1071 PANTHER FORMIN-J 1 95 - -
Sebi370g00057 1071 ProSiteProfiles Formin homology-2 (FH2) domain profile. 619 1058 IPR015425 -
Sebi370g00057 1071 Coils Coil 939 966 - -
Sebi370g00057 1071 Gene3D - 146 291 - -
Sebi370g00057 1071 MobiDBLite consensus disorder prediction 407 624 - -
Sebi370g00057 1071 Gene3D Formin, FH2 domain 620 1043 IPR042201 -
Sebi370g00057 1071 MobiDBLite consensus disorder prediction 672 691 - -
Sebi370g00057 1071 MobiDBLite consensus disorder prediction 409 432 - -
Sebi370g00057 1071 MobiDBLite consensus disorder prediction 354 368 - -
Sebi370g00057 1071 Pfam Formin Homology 2 Domain 624 1033 IPR015425 -
Sebi370g00057 1071 MobiDBLite consensus disorder prediction 440 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi370g00057 Sebi-Chr370 807584 818056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi370g00057 1 387 FH2 protein (formin) Gene Family AT1G31810 61.364 5.05e-166 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi370g00057 - - gmx:100781274 714.146