Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi370g00035 ATGGGGTCCAGTGGCAGCAAAGCCACTTCCTCTTGCAGTTCATCGTCGTCTTCGGGCAGTTTCCGGAAGGGTCGATCTAAGGGACATAGAGGCTTCCCTTCTTATTGTCTTGGAACAACATCTGGATCTCGTGACAGTGACAATGACGATCAGGTTTGTGATCAGAATAAAGTAAATGGAAGGGATGTTACATACACTAGCGGCAACGAAATAGACTCAGATGGAGTGAAAACAGGGTCTTTTAGAAAGGTTAAATCTGATGAAATGCCTTGTATGCCTTCTAACATTGAGCTTGATGAGTGGGGTCACACTGCATCCAGAACTGGTAGCAGCTCTGCCCATGCTTCCTCAACTCAGTCCCTGAACCCTTCAAGTCGATTCCTTTCTCGTTTTAGCCTCATTCCTGGTAATCTAAGCTTCAGGCTTAGCAGAACCACCAGTTTGGGATCATCTAGGCCTTGCCCCGTCTCTTCGGAAAATCACTCAATATTTAACAATGAGGATGAGCTTAATCTGCATCCAGGGCTACCTGGCAGCTTGATTAATAGAAATGAAACTCAACAATGTAGTGACTTGCTCAATGCATCTTTTGTTAATCGAGTGCCTGTACAGTATCATGAAGATGCTTCTAATAATTTAAGTTCTAATGCCCCAGCATTGGGTTTGTCTGGCAACTTGCAGAGCAGCCCCACACTTTCTCCTATCCAGGATTGGCATACAGATAGACGAAATGGAGCTCGAGAACCTGTTGAACATAGAGAAGTGAGAGATGCTAGTCAGGATAGTGGAAGACAAGTAGGGGAGAGAGATACAAGAGTGTCACCATCTGATCGTAATGCTGTAAATTCTCATCCTGCATCTGGATATCCTCTTCCCAGCATGTCTAGCTCCTTGCTTAACACCCAAGACTATGAGGTTGAGACTTCACGACCAAGAGAAACTAGGTATCAGGATCTACTAGAACATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGATCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGCCAACATAGAAATGGTCGTTGTACATGCAGAATAAGTAGTCGTGATAACAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCCGACTTCTGTGTCTTCTATTGGATTGTTGCCTCGCACAATGAAGTTGTGGAATCCTTGCCTGTCACAAATTACTACACTAAGTTGCAACAAAAACATCAGAGAGAAAGAACAGATGCTATATATGCCTTGTGGAGTATGAAGATGGAGACAGCATGCGGCTTTACTGGGACTCCACATGTGCTAGAGATGCTTGGAAATGTGTATCTTAACTTTTGTATATTATACACAGGCATATCCTCTGAAACACCCATCCCTCCTGAAGAAAGTATTAAAGGAGAATGGTTGAATTGTGAAGATGAAGAGCATAAACGACGATGTCTCCACACAAGATCTCGACCCTCAAGCGACCACAGCTCCGATTATTTAGCACACTCTCAATCGCAGCCTCAGCCTCGCCGCCTCGAGGCTTCGCGGCGGCGGCGGCTTCGACGGGGAACAATTCCGGCGGAAAGGGAAAGAAGGAGAGAGAAAAGAGAAGGAGCGTACGAAGCTCCGGCGACGGAACGACACCGTCGAGCCATCACGAGCCGCATGCTCGCTGGACTCCGTCAGTATGGGAATTTCCCTCTCCCGGCGCGTGCTGACATGAACGACGTGCTCGCCGCCCTCGGCGTGAGCGCTGGTTGGGTTGTCGATGCCGATGGCACCACCTATCGCCAGTGCCCCCCTCCTTCTCACATGGGGTCATTTGCGGCAAGGTCAGTTGAAAGTCAACTCTCTGCTGGTTCTTTGAGAACTTGCTCTGTTAAGGAACCTCTAGAGAATCAGCCACCAGTACTAAGAATTGATGAATGCTTGTCGCCTGCATCCATCGATTCAGTTGTAATTGCAGAAAGGGACTCAAAGAATGGGAAATATGCAAGTGCAAGCCCCATCAATTCAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATGCTGGAGTGCATGAGAATGACTTTACTGGCACACCATATGTTCCCGTATTCATAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGACCCTGAAGGTATTAGGCAGGAGCTAATCCATATTAAATCTTTAAATATAGACGGTGTTATTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAACCCGCAGAAATATGTGTGGTCTGGTTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAGCTAAATTTACAGGTTGTTATGGCATTTCATGAATATGGAGGGAATGATTCTAGTGATGCACTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACTGAATGCCTATCTTGGGGAATTGACAAAGAACGAGTTCTCAAAGGTCGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGTTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTAGAAATTGGACTTGGAGCATCTGGGGAGCTGAAATACCCTTCTTTTTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTACGCAGAGCAGCTAAATTACGTGGTCACTCTTTCTGGGCTAGAGGACCTGATAATGCTGGGCATTACAACTCTATGCCGCATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGATAACTATTATGGACGCTTCTTCTTACATTGGTACTCCCAGACATTAATAGACCATGCTGATAATGTTCTGTCTCTTGCAAGTCTTGCATTTGAGGAAACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAGACCCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCCACAAATCAGGATGGATACTCTCCTGTCTTTGAGGTTCTGAAAAAACATGCTGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGCCAGGAAGCTAATGAATCATTGGTTGATCCAGAGGGTTTGAGTTGGCAGGTATTAAATTCAGCTTGGGATCGGGGGTTGATAGACGCTGGAGAGAATGCACTCCTCTGCTATGATAGAGAAGGGTACAGGAGACTGGTTGAGATGGCAAAGCCCAGAAATGATCCTGATCACCGGCACTTCTCTTTCTTTGTTTATCAGCAACCATCTTTGCTTCAGGGAAATGTTTGTTTGTCAGAATTGGATTTCTTCATCAAATGTATGCATGGTAAGGATCCTTCAAGTTCACTGGTGAGATGA 3519 0.4464 MGSSGSKATSSCSSSSSSGSFRKGRSKGHRGFPSYCLGTTSGSRDSDNDDQVCDQNKVNGRDVTYTSGNEIDSDGVKTGSFRKVKSDEMPCMPSNIELDEWGHTASRTGSSSAHASSTQSLNPSSRFLSRFSLIPGNLSFRLSRTTSLGSSRPCPVSSENHSIFNNEDELNLHPGLPGSLINRNETQQCSDLLNASFVNRVPVQYHEDASNNLSSNAPALGLSGNLQSSPTLSPIQDWHTDRRNGAREPVEHREVRDASQDSGRQVGERDTRVSPSDRNAVNSHPASGYPLPSMSSSLLNTQDYEVETSRPRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISSRDNNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSDFCVFYWIVASHNEVVESLPVTNYYTKLQQKHQRERTDAIYALWSMKMETACGFTGTPHVLEMLGNVYLNFCILYTGISSETPIPPEESIKGEWLNCEDEEHKRRCLHTRSRPSSDHSSDYLAHSQSQPQPRRLEASRRRRLRRGTIPAERERRREKREGAYEAPATERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALGVSAGWVVDADGTTYRQCPPPSHMGSFAARSVESQLSAGSLRTCSVKEPLENQPPVLRIDECLSPASIDSVVIAERDSKNGKYASASPINSVDCLEADQLMQDIHAGVHENDFTGTPYVPVFIKLPAGIINKFCQLIDPEGIRQELIHIKSLNIDGVIVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLNLQVVMAFHEYGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLASLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLKKHAVTMKFVCLGFHLSSQEANESLVDPEGLSWQVLNSAWDRGLIDAGENALLCYDREGYRRLVEMAKPRNDPDHRHFSFFVYQQPSLLQGNVCLSELDFFIKCMHGKDPSSSLVR 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi370g00035 1172 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 771 785 IPR001554 GO:0000272|GO:0016161
Sebi370g00035 1172 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 792 810 IPR001554 GO:0000272|GO:0016161
Sebi370g00035 1172 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 907 929 IPR001554 GO:0000272|GO:0016161
Sebi370g00035 1172 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 1049 1072 IPR001554 GO:0000272|GO:0016161
Sebi370g00035 1172 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 1014 1030 IPR001554 GO:0000272|GO:0016161
Sebi370g00035 1172 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 980 999 IPR001554 GO:0000272|GO:0016161
Sebi370g00035 1172 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 1031 1042 IPR001554 GO:0000272|GO:0016161
Sebi370g00035 1172 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 814 835 IPR001554 GO:0000272|GO:0016161
Sebi370g00035 1172 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 1087 1109 IPR001554 GO:0000272|GO:0016161
Sebi370g00035 1172 MobiDBLite consensus disorder prediction 276 296 - -
Sebi370g00035 1172 MobiDBLite consensus disorder prediction 240 275 - -
Sebi370g00035 1172 MobiDBLite consensus disorder prediction 1 22 - -
Sebi370g00035 1172 Pfam Glycosyl hydrolase family 14 756 1136 IPR001554 GO:0000272|GO:0016161
Sebi370g00035 1172 MobiDBLite consensus disorder prediction 220 238 - -
Sebi370g00035 1172 SUPERFAMILY (Trans)glycosidases 731 1163 IPR017853 -
Sebi370g00035 1172 MobiDBLite consensus disorder prediction 556 585 - -
Sebi370g00035 1172 MobiDBLite consensus disorder prediction 1 78 - -
Sebi370g00035 1172 MobiDBLite consensus disorder prediction 521 585 - -
Sebi370g00035 1172 Pfam BES1/BZR1 plant transcription factor, N-terminal 564 713 IPR008540 -
Sebi370g00035 1172 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 675 1164 IPR001554 GO:0000272|GO:0016161
Sebi370g00035 1172 Gene3D Glycosidases 727 1170 - -
Sebi370g00035 1172 MobiDBLite consensus disorder prediction 533 547 - -
Sebi370g00035 1172 MobiDBLite consensus disorder prediction 220 296 - -
Sebi370g00035 1172 MobiDBLite consensus disorder prediction 104 123 - -
Sebi370g00035 1172 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi370g00035 Sebi-Chr370 495947 508841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi370g00035 583 1163 Glycoside Hydrolase AT5G45300 70.840 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Sebi370g00035 Glyco_hydro_14 1.5e-83 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi370g00035 K01177 - gmx:100777004 1160.98