Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi370g00033 ATGACCCATTTGAATTCTACATTCTTGGAATGCTTCTACCCATTTCTGCAACTGGCATGGAGTCACATGCATGCACCAAAGAGTAACAGAGTTGAACTTACAAGGATATCAGTTGCATGGATCCTATCTCAACATGTTGGTAATCTCTCTTTTCTGAGACACCTTAATCTCGGAAACAACAGTTTCCATGGAAAGATCCCACAAGAATTGGGTCGGTTGTTACAATTGCAGTATCTCTATCTCACCAATAACTCCTTCACAGGGGAGATTCCTACAAACTTGACAAGTTGCTCTAATCTCAAAGACTTGTTCTTAGATGGAAATAATCTGATTGGCAAAATACCAATTGGAATCGGCTCTCTTTGGAAGCTTCAATCATTGACGGTTGGGAAAAACAATTTAACTGGAGGATTCCCTCCATTTATAGGGAATCTTTCATCCCTCATCCGTGTCTCGGTGGCTTATAATAACTTAGAGGGAGATATTCCACAACAAATATGCCGCCTCAAAAATCTGACAGTGATAGTAGTGGAAGTGAACAAACTATCTGGTACATTTCCTTCTTGCCTTTACAATATGTCATCTCTTATTGTGATCTCAGTTGCAGATAATTACTTTGACGGCACTCTTCAACCCAACATGTTCCACACACTCCCCAATCTCCAATTTTTTCAATTGGTAGGAATCAATTCTCAGCGTTTTCTCATTAACAAACTTATTGGACTTGTCACAAACTCTTTGAGTGGCACTCTCCCTGGTGAAGTGGGCAGGTTAACAAATATAAATTGGTTAGATCTCTCTGAGAATCTTCTGTCTGGTAACATTCCTGGAACCATTGGACAATGCATGAGATTGGAGTACCTTTATTTGCAAGGAAATTCCTTTCATGGTATCATGCCATCCTCCTTGGCTTCACTCAAAGGACTTCAACGTGTAGACCTGTCACGAAACAGCTTGTCTGGATCAATTCCCAAAGGTTTCCAAAATATTTCATTTTTAGAATACTTGAATGTTTCTTATAACATGTTGAATGGTGAGGTACCAACAGAAGGTGTCTTTCAAAATGCAAGCAAGTTAGGAGTGGCCGGAAACAATAAGCTTTGTGGAGGTATTCCAGAGTTGCATCTACCGCCATGCCCTGTCAAAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTATGTCAGAAGATGATGTTGTTGCCGTAAAGGTGTTGAACCTTCAAAGGAAAGGAGCTCACAAGAGTTTCATTACCGAATGCAATGCACTTAAAAATATTAGACATCGAAATCTGGTGAAAATTTTAACATGTTGTTCTAGTACAGATTACAAAGGCCAAGAATTCAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCTTAGAACAATGGCTGCATCCAAGGACAGCAGGTGAAGAGCATCCAAGAACACTAGACCTTGATCAAAGATTAAATATCATTATGGATGTTGCTTCTGCATTACATTATCTTCATCTTGAATGTGAGCAATTGGTCCTTCATTGTGATCTGAAGCCAAGCAATGTCCTACTTGATGATGGCATGGTTGCTCATGTGAGTGACTTTGGCATAGCAACACTTGTCTCAACCATTGACGGTACCTCTCATAAGCAAACTAGTACAACTGGAATAAAAGGGACTGTTGGCTATGCTCCCCCGGAGTATGGAGTAGGTTCTGAAGTGTCCACACATGGTGACATGTATAGCTTCGGGATTCTTGTGTTGGAAATGCTTACGGGAAGAACACCAACCGATGAAGTGTTTGAAGATGGTCAAAATCTGCATAAGATTGGACTTGCTTGTTCAGTGGAATCACCAAGAGAAAGAATGAATATAGTGGATGTCATTAGAGAGCTAAACAAAATCAGAAACGCCTTTCTCAATGGTGTTCACACAAGTGAGTAA 1923 0.3999 MTHLNSTFLECFYPFLQLAWSHMHAPKSNRVELTRISVAWILSQHVGNLSFLRHLNLGNNSFHGKIPQELGRLLQLQYLYLTNNSFTGEIPTNLTSCSNLKDLFLDGNNLIGKIPIGIGSLWKLQSLTVGKNNLTGGFPPFIGNLSSLIRVSVAYNNLEGDIPQQICRLKNLTVIVVEVNKLSGTFPSCLYNMSSLIVISVADNYFDGTLQPNMFHTLPNLQFFQLVGINSQRFLINKLIGLVTNSLSGTLPGEVGRLTNINWLDLSENLLSGNIPGTIGQCMRLEYLYLQGNSFHGIMPSSLASLKGLQRVDLSRNSLSGSIPKGFQNISFLEYLNVSYNMLNGEVPTEGVFQNASKLGVAGNNKLCGGIPELHLPPCPVKGSFGSVYKGNLMSEDDVVAVKVLNLQRKGAHKSFITECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMKNGSLEQWLHPRTAGEEHPRTLDLDQRLNIIMDVASALHYLHLECEQLVLHCDLKPSNVLLDDGMVAHVSDFGIATLVSTIDGTSHKQTSTTGIKGTVGYAPPEYGVGSEVSTHGDMYSFGILVLEMLTGRTPTDEVFEDGQNLHKIGLACSVESPRERMNIVDVIRELNKIRNAFLNGVHTSE 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi370g00033 640 Gene3D Ribonuclease Inhibitor 3 382 IPR032675 -
Sebi370g00033 640 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515
Sebi370g00033 640 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 22 231 - -
Sebi370g00033 640 PANTHER OS04G0122200 PROTEIN 43 140 - -
Sebi370g00033 640 Pfam Leucine Rich Repeat 52 71 IPR001611 GO:0005515
Sebi370g00033 640 Pfam Leucine Rich Repeat 75 96 IPR001611 GO:0005515
Sebi370g00033 640 Gene3D Phosphorylase Kinase; domain 1 383 459 - -
Sebi370g00033 640 SUPERFAMILY L domain-like 138 369 - -
Sebi370g00033 640 SMART serkin_6 382 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi370g00033 640 Gene3D Transferase(Phosphotransferase) domain 1 460 636 - -
Sebi370g00033 640 SUPERFAMILY Outer arm dynein light chain 1 46 136 - -
Sebi370g00033 640 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 456 603 - -
Sebi370g00033 640 Pfam Protein kinase domain 382 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi370g00033 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Sebi370g00033 640 SUPERFAMILY Protein kinase-like (PK-like) 382 625 IPR011009 -
Sebi370g00033 640 ProSiteProfiles Protein kinase domain profile. 374 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi370g00033 640 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 232 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi370g00033 Sebi-Chr370 486505 489685 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi370g00033 46 638 Receptor kinase-like Gene Family AT3G47110 36.947 1.24e-108 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi370g00033 Pkinase 1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi370g00033 - - qsu:111989208 523.857