Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi370g00026 ATGGAATCTTGGCATCTTGGAATAGTTCAATCCACTTTCTGTAACTGGCATGGAATAACATGCAATGCCATGCAACAAAGAGTTACAAAGTTGAGATTAAAAGGACACAATTTGCATGGATCCATATCACCTCATGTTGGAAATCTCTCTCTTATGACAAACCTCAACCTCGGAAACAACCACTTCTATGGAAACATTCCACAAGAATTGGGTCGGTTGTTACAATTGCAGTCACTGGTATTCATCAACAACTCATTGGCTGGAGAATTTCCTACAAACTTGACAAGGTGTTCTGAACTCAAACGCTTAGACTTGGCAGGGAACCATCTCATGGGTAAAATTCCAATTCAAATTGGCTCTTTTGGAAAGCTTAAAAATTTGTTCATGGAAAGAAACAATTTTTCAGGACAAATCCCACCATCTATAGGGAATCTTTCATCCCTTAATCAACTTGCAATGGCTTACAATAACTTGGAGGGAAATATTCCACAAGAAATATGCCACCTAAAACGGTTCAAATATATACATGTGAGTGTGAACCAATTGTTTGGTATATTTCCTTCTTGTCTTTACAATATGTCATTTCTTATTGAAATTACAGCTGCGGAGAATCAATTCAATGGGTCTTTTCCACCCAACATGTTCCACACCCTATCCAATCTCCAAGCTTTTGCCATTGCTGGGAATCAATTTTCAGGACAAAATATGTTAGAAGGAAATATTCCTCCAAGTTTAGGAAACTGCCAAATGTTACAATACCTAAACCTTTCACAAAACTATCTTAGAGGAACCATACCATTAGAGGTTTTTAGACTTTCCTCTTTAGCTAACTTACTGGACTTGTCTAAAAACTCATTGAGTGGAAGCTTACCAAAAGAAGTTGGCATGCTAAAAAATATTGATGAGCTAGATGTCTCTGAAAATCATTTGTCTGGGGATATTCCTAGAACCATTGGAGAATGCACAAGCTTAGAGTTCCTTCATTTGCAAGGAAACTCCTTCCATGGAATCATACCATCCTCCTTGGCTTCTCTCAAAGGTCTTCAATATTTAGACCTGTCAAGAAATTTATTGTCTGGACCAATTCCTGATGTTTTGCAGAATATTACTACTTTAAAACATTTGAATGTTTCTTTTAACATGTTGGATGGTGAGGTACCAACAAAAGGTGTCTTTGGAAATGCAAGCGAGTTAGCTGTGACTGGAAACAACAAGCTTTGTGGAGCTTTCTTTTGGATCAGAAAAACAAACAAAAAAACATCTTTTGATTCACCACCAACAATTGATCAGTTGCCCAAGGTTTCATACCAAGACCTACACCACGGAACCGATGGGTTCTCAGCTAGAAACTTGATAGGATTGGGAAGTTTTGGCTCTGTCTACAAAGGAACTCTTGAGTCAGAAGATAAAGTTGTTGCTGTAAAGGTCTTAAACCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTACTGAATGCAATGCACTCAAAAACATTAGACATCGAAATCTGCCAAGCAATGTCCTTCTCGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAACCATTGACGGTACCTCTCATAAGCAAACTAGTACAATTGGAATAAAGGGGACTGTTGGCTACACTCCTCCAGAGTATGGAGCGGGTTCTGAGGTGTCTACCTACGGTGACATGTATAGCTTTGGGATTCTTGTGTTGGAAATGCTTACTGGAAGAAGGCCTACAGAAAAAATGTTTGAAGATGATGAAAATCTTCATAACTTTGTTGAAATTTCCCTTCCTGATAATCTTTTGCTGATTTTGGACCCACGACTTGTTCCAAGAGATGAAGAAGATGAATTGGAAGAAGAAAACAATGGGAATATTAGTCCAAATGTTGAGAAGTGCTTAGTTTCACTTTTTCGGATTGGACTTGCTTGTTCTATGGAATCACCAAAAGAAAGAATGAGTGTGGTTGATGTCATTAGGGAGCTCAACCTAATCAGAAAGGCATTTCTTGGTGGTAAGATAAATAGACTCTGCATATAA 2049 0.3826 MESWHLGIVQSTFCNWHGITCNAMQQRVTKLRLKGHNLHGSISPHVGNLSLMTNLNLGNNHFYGNIPQELGRLLQLQSLVFINNSLAGEFPTNLTRCSELKRLDLAGNHLMGKIPIQIGSFGKLKNLFMERNNFSGQIPPSIGNLSSLNQLAMAYNNLEGNIPQEICHLKRFKYIHVSVNQLFGIFPSCLYNMSFLIEITAAENQFNGSFPPNMFHTLSNLQAFAIAGNQFSGQNMLEGNIPPSLGNCQMLQYLNLSQNYLRGTIPLEVFRLSSLANLLDLSKNSLSGSLPKEVGMLKNIDELDVSENHLSGDIPRTIGECTSLEFLHLQGNSFHGIIPSSLASLKGLQYLDLSRNLLSGPIPDVLQNITTLKHLNVSFNMLDGEVPTKGVFGNASELAVTGNNKLCGAFFWIRKTNKKTSFDSPPTIDQLPKVSYQDLHHGTDGFSARNLIGLGSFGSVYKGTLESEDKVVAVKVLNLQKKGAHKSFITECNALKNIRHRNLPSNVLLDDDMVAHVSDFGIARLVSTIDGTSHKQTSTIGIKGTVGYTPPEYGAGSEVSTYGDMYSFGILVLEMLTGRRPTEKMFEDDENLHNFVEISLPDNLLLILDPRLVPRDEEDELEEENNGNISPNVEKCLVSLFRIGLACSMESPKERMSVVDVIRELNLIRKAFLGGKINRLCI 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi370g00026 682 Gene3D Ribonuclease Inhibitor 1 130 IPR032675 -
Sebi370g00026 682 FunFam Leucine-rich repeat receptor protein kinase EMS1 138 233 - -
Sebi370g00026 682 ProSitePatterns Protein kinases ATP-binding region signature. 452 475 IPR017441 GO:0005524
Sebi370g00026 682 Gene3D Phosphorylase Kinase; domain 1 418 505 - -
Sebi370g00026 682 ProSiteProfiles Protein kinase domain profile. 351 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi370g00026 682 PANTHER OS04G0122200 PROTEIN 234 503 - -
Sebi370g00026 682 Gene3D Transferase(Phosphotransferase) domain 1 506 675 - -
Sebi370g00026 682 SUPERFAMILY L domain-like 8 234 - -
Sebi370g00026 682 Gene3D Ribonuclease Inhibitor 235 417 IPR032675 -
Sebi370g00026 682 Gene3D Ribonuclease Inhibitor 131 234 IPR032675 -
Sebi370g00026 682 SUPERFAMILY Protein kinase-like (PK-like) 418 665 IPR011009 -
Sebi370g00026 682 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 234 419 - -
Sebi370g00026 682 FunFam Nuclear pore complex protein NUP107 1 134 - -
Sebi370g00026 682 Pfam Leucine rich repeat 323 382 IPR001611 GO:0005515
Sebi370g00026 682 Pfam Protein tyrosine and serine/threonine kinase 500 597 IPR001245 GO:0004672|GO:0006468
Sebi370g00026 682 SUPERFAMILY L domain-like 210 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi370g00026 Sebi-Chr370 400851 403883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi370g00026 498 673 Receptor kinase-like Gene Family AT3G47570 43.258 8.75e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi370g00026 PK_Tyr_Ser-Thr 1.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi370g00026 - - gab:108462313 482.256