LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi370g00024	ATGCCGCCTAAAAACTTGACAGCAATATCAGTGCATGTCAACAAATTGTTGGGTACATTTCCTTCTTGTCTTTACAATATATCATCTCTTACTTTAATCTCAGCTGCAGAGAATCAGTTTAATGGCTCCCTACCACCCAACATGTTCCACACCCTCCCCAATCTCCAGGCTTTTGGAATTGCTGGGAATCAGTTCTCAGGTCAAATCCCCACTTCCGTTGCAAATGCTTCTGTCCTTGGAGCTCTTGATATCGGTGAAAACTATTTCATAGGACAAGTTCCAAGTATGGGGAAGCTACAAGATCTTTACAACCTACGTGTAACTAGCAACAATCTAGAAAATATGTTAGAAGGAAATATTCCTCCAAGCATAGGAAACTGCCAAAAGTTACAATACCTAGACCTTTCGCAAAACAACCTCAGAGGAACAATACCTTCAGAGGTTGTTAGTCTCTCCTCTTTAACAAGATTATTGGACTTGTCACAGAACTCATTGAATGGTAGTATACCAAATGAAGTGGGGAAGTTAAAAAATATTGGAAAGATATATGTCCATGAAAACCATCTCTCTGGTGACATTCCTACAACCATTGGAGAATGCATAAGCTTGGAGTATCTTTATTTACAAGGTAATTCCTTCCATGGAACCATACCACCCTCTTTGGCTTCCCTCAAAGGTCTTCGACGTTTAGACCTATCACGGAATCGCTTGTCTGGATCAATTCCTAAAGATCTGCAAAACATTTCTTTCCTGGAATACTTTAATGTATCTTTTAACATGCTGGACGGTGAGGTTCCAACTGAAGGTGTCTTTCGAAATGCAAGTGAGTTAGCAGTAACCGGAAACAATAAGCTTTGTGGAGGTATTATAGAGTTGCATCTACCGCCATGCCCTGACAAAGGTATGAAACCTGCCAAACACCATAATTTCAGGTTGATAGCAGTCATAGTTAGTGTGGTTGCTTTTCTTCTCATATTGTTATGTATTCTAACAATCTACTGGATGTGGAAAAGAAACAAGAAGCCATCTTGTGATTCACCAACAATTGATCAGCTAGCTAAGGTTTCATATCAAAACCTACACAATGGAACTGATGGGTTCTCAGCTAGAAACTTGATAGGATCTGGAAATTTTGGCACTGTCTACAAAGGAACTCTTGAGTCAGAAGATAGAGTTGTTGCCATAAAGGTCCTAAATCTTCAAAAGAAGGGTGCACACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAATATTAGACATCGAAATCTGGTTAAGATTCTGACATGTTGTTCCAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAGTACATGAACAATGGAAGCTTAGAAAGCTGGTTGCATCCCACAACAGAAAATACAGATCAGTCCAAATCACTGACCCTTGAGCAAAGGTTAAATATTATTACTGATGTTGCTTCAGCAGTTCATTATCTTCACTATGAATGTGAGCAACCTATCATTCATTGTGATTTAAAGCCTAGCAATGTGCTTCTTGATGATTGTATGGTAGCTCACGTGAGTGATTTTGGCTTAGCAAGATTGCTCCCAAGTGTTGGAGTCTCTCTCAAGCAAAGTAGCACAATTGGAATAAAGGGGACTATTGGTTATGCACCTCCAGAGTATGGAATGGGTTCTGAGATGTCAATTGAAGGCGACATGTATAGCTTTGGGATTCTAGCTTTAGAAATGCTAACTGGAAGGAGACCCACAGATGAAATGTTTGGAGATGGTCATAATCTTCATAATTATGTTAAACTTTCAATTTCAAATAACATTTTGCAGATTGTGGACCCAGCTATTCTCCGCCATGGATTAGATGTGGCTTCTGAAAGTGAGGACCTTGGCATTATGCATCCTAAGATAGAGAAATGTTTACTTTCACTTTTTAGTATTGCACTTGCCTGTTCCGTGGAATCACCGAAAGAAAGAATGAGTATGGTTGATGTCACAAGGGAGCTTAATAAAATCAAAACTTACTTTCTTACTGGGGTTTAA	2031	0.39	MPPKNLTAISVHVNKLLGTFPSCLYNISSLTLISAAENQFNGSLPPNMFHTLPNLQAFGIAGNQFSGQIPTSVANASVLGALDIGENYFIGQVPSMGKLQDLYNLRVTSNNLENMLEGNIPPSIGNCQKLQYLDLSQNNLRGTIPSEVVSLSSLTRLLDLSQNSLNGSIPNEVGKLKNIGKIYVHENHLSGDIPTTIGECISLEYLYLQGNSFHGTIPPSLASLKGLRRLDLSRNRLSGSIPKDLQNISFLEYFNVSFNMLDGEVPTEGVFRNASELAVTGNNKLCGGIIELHLPPCPDKGMKPAKHHNFRLIAVIVSVVAFLLILLCILTIYWMWKRNKKPSCDSPTIDQLAKVSYQNLHNGTDGFSARNLIGSGNFGTVYKGTLESEDRVVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMNNGSLESWLHPTTENTDQSKSLTLEQRLNIITDVASAVHYLHYECEQPIIHCDLKPSNVLLDDCMVAHVSDFGLARLLPSVGVSLKQSSTIGIKGTIGYAPPEYGMGSEMSIEGDMYSFGILALEMLTGRRPTDEMFGDGHNLHNYVKLSISNNILQIVDPAILRHGLDVASESEDLGIMHPKIEKCLLSLFSIALACSVESPKERMSMVDVTRELNKIKTYFLTGV	676

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi370g00024	676	Gene3D	Ribonuclease Inhibitor	2	304	IPR032675	-
	Sebi370g00024	676	Pfam	Leucine Rich Repeat	129	147	IPR001611	GO:0005515
	Sebi370g00024	676	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	498	510	IPR008271	GO:0004672\|GO:0006468
	Sebi370g00024	676	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	449	675	-	-
	Sebi370g00024	676	Gene3D	Phosphorylase Kinase; domain 1	348	448	-	-
	Sebi370g00024	676	Gene3D	Transferase(Phosphotransferase) domain 1	449	672	-	-
	Sebi370g00024	676	CDD	STKc_IRAK	373	668	-	-
	Sebi370g00024	676	FunFam	LRR receptor-like serine/threonine-protein kinase EFR	338	448	-	-
	Sebi370g00024	676	SUPERFAMILY	L domain-like	3	287	-	-
	Sebi370g00024	676	ProSiteProfiles	Protein kinase domain profile.	367	672	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi370g00024	676	Pfam	Protein kinase domain	370	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi370g00024	676	FunFam	LRR receptor-like serine/threonine-protein kinase GSO1	2	300	-	-
	Sebi370g00024	676	PANTHER	OS04G0122200 PROTEIN	4	113	-	-
	Sebi370g00024	676	ProSitePatterns	Protein kinases ATP-binding region signature.	373	396	IPR017441	GO:0005524
	Sebi370g00024	676	SUPERFAMILY	Protein kinase-like (PK-like)	341	665	IPR011009	-
	Sebi370g00024	676	SMART	serkin_6	367	672	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi370g00024	676	Pfam	Leucine rich repeat	202	261	IPR001611	GO:0005515
	Sebi370g00024	676	PRINTS	Leucine-rich repeat signature	224	237	-	-
	Sebi370g00024	676	PRINTS	Leucine-rich repeat signature	130	143	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi370g00024	Sebi-Chr370	378320	380883	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi370g00024	5	673	Receptor kinase-like Gene Family	AT3G47570	43.444	0.0	573

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Sebi370g00024		Pkinase	5.7e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi370g00024	-		-	gmx:100792724	924.08