LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi370g00021	ATGAATCGGCTCTCTTCAGAAGCTTCAAACATTGACGGTTGGGGAAAACAATTTAACGGGAAGATTCCCGCCATTCATAGGGAATCTTTCATCCCTCATCCGTGGCTCGGTTCCACAAGAAATATGCAGACTCAAAAACTTGACATGGATAGCAGTGGAAGTGAACAAACTATCTGTCTAGGGAGGCTACAAGATCTTCGGATTCTAAGTCTAACTTTCAACAGTCTAGGTCACAATTCAATGAAGGATTTGGAGTTTTTAAAATCATTGACAAATTGTAAAACCATTTTGGAAGGGATGATTCCAGCTTCTTTCGGGAAGTTTCAGAAGATGCAAGTGGGAAGTTTAACAAATATCGATGGGTTGGATCTCTCTGAGAATCACCTGTCTGGTAACCTTCCTGGAACCATTGGAAAATGCATGAGCTTGGAGTACCTTTATTTACAAGGAAATTCTTTCAATGGAAGTATACCGTCCTCATTGGCTTCACTCAAAGGCCTTCAAGAATTAGACCTGTCACGAAACCGCTTGTCTGGATCAATTCCTAAAGGTCTACAGAACATTTCCTTCCTAGAATATTTGAATGTTTCTTTTAACATGTTGGATGGTGAAGTACCAACAGAAGGTGTCTTTCGAAATGCAAGTGCCTTATCGGTGGTTGGAAACAACAACCTTTGTGGAGGTATTTCAAAGTTGCATTTACCACCATGCCCTGTCAAAGGTATGAAACCTGCCAAACATCATAATTTCAAGTTGATAACAGTGATAGTCAGTGTGATTGCTTTTCTTCTCATATTGTTATTTGTTCTAACTATCTACTGGATGAGGAAAAGAAACAAGAAGCCATCTTCTCATTCACCAATAGTTGATCAACTGCCTAAGGTTTCATACCAAGATCTACACAATGGAAGCAATGGGTTCTCAGCTAGAAACTTGGTGGGATATGGAAATTTTGGCTCTGTCTACAAAGGAACTCTTGAGTCAGAACATAGAGGAGTTGTTGCTATAAAGGTCCTAAACCTTCAAAAGAAGGGAGCACAAAAGAGTTTTATTGCTGAATGTGATGCACTAAAAAATATTAGACATCGAAATCTGGTTAAGATCCTGACATGTTGTTCCAGTACAGATTACAAAGCAGTTCATTATCTTCACTCTGAATGTGGGGAGCCTGTCATTCATTGTGATTTAAAGCCTAGCAACGTTCTTCTTGATGAATGTATGGTAGCTCACGTGAGTGATTTTGGCTTAGCAAGATTGCTCTCAAGTGTTGGAGTCTCTTTGAAGCAAAGTAACACAATTGGAATAAAGGGGACTATTGGTTATGCACCTCCAGAGTATGGAATGGGTTCTGAGGTGTCAATTGAAGGTGACATGTATAGCTTCGGAATTCTGGTTTTAGAAATGTTAACTGGAAAGAGGCCCACAGATGAAATGTTTAAAAATGGTCTCAATCTCCATAGTTATGTTGAAAATTCCATTTCAAATCACCTTTTGCAGATTGTGGACTCGACTCTTCTCCCCAATGGATTGGAACAAGCCACTGACAATGGCATGCATCCTAATGTGGAGAAATGTTTACTTTCACTTTTTAGGATTGCGCTTTCTTGTTCAGTGGAATCACCAAGAGAAAGAATGAGTATGGTAGATGTCACTAGGGAACTTAATCTTATCAAAAGCTTCTTTCCTCATGGGGTTTAA	1698	0.394	MNRLSSEASNIDGWGKQFNGKIPAIHRESFIPHPWLGSTRNMQTQKLDMDSSGSEQTICLGRLQDLRILSLTFNSLGHNSMKDLEFLKSLTNCKTILEGMIPASFGKFQKMQVGSLTNIDGLDLSENHLSGNLPGTIGKCMSLEYLYLQGNSFNGSIPSSLASLKGLQELDLSRNRLSGSIPKGLQNISFLEYLNVSFNMLDGEVPTEGVFRNASALSVVGNNNLCGGISKLHLPPCPVKGMKPAKHHNFKLITVIVSVIAFLLILLFVLTIYWMRKRNKKPSSHSPIVDQLPKVSYQDLHNGSNGFSARNLVGYGNFGSVYKGTLESEHRGVVAIKVLNLQKKGAQKSFIAECDALKNIRHRNLVKILTCCSSTDYKAVHYLHSECGEPVIHCDLKPSNVLLDECMVAHVSDFGLARLLSSVGVSLKQSNTIGIKGTIGYAPPEYGMGSEVSIEGDMYSFGILVLEMLTGKRPTDEMFKNGLNLHSYVENSISNHLLQIVDSTLLPNGLEQATDNGMHPNVEKCLLSLFRIALSCSVESPRERMSMVDVTRELNLIKSFFPHGV	565

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi370g00021	565	SUPERFAMILY	Protein kinase-like (PK-like)	279	555	IPR011009	-
	Sebi370g00021	565	Pfam	Protein tyrosine and serine/threonine kinase	311	375	IPR001245	GO:0004672\|GO:0006468
	Sebi370g00021	565	FunFam	LRR receptor-like serine/threonine-protein kinase EFR	278	383	-	-
	Sebi370g00021	565	Pfam	Protein kinase domain	378	490	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi370g00021	565	PANTHER	OS04G0122200 PROTEIN	110	557	-	-
	Sebi370g00021	565	SUPERFAMILY	L domain-like	35	227	-	-
	Sebi370g00021	565	Gene3D	Transferase(Phosphotransferase) domain 1	381	563	-	-
	Sebi370g00021	565	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	111	234	-	-
	Sebi370g00021	565	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	391	403	IPR008271	GO:0004672\|GO:0006468
	Sebi370g00021	565	Gene3D	Ribonuclease Inhibitor	6	243	IPR032675	-
	Sebi370g00021	565	ProSitePatterns	Protein kinases ATP-binding region signature.	313	337	IPR017441	GO:0005524
	Sebi370g00021	565	SMART	serkin_6	307	561	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi370g00021	565	Gene3D	Phosphorylase Kinase; domain 1	269	380	-	-
	Sebi370g00021	565	ProSiteProfiles	Protein kinase domain profile.	307	561	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi370g00021	565	Pfam	Leucine Rich Repeat	167	187	IPR001611	GO:0005515
	Sebi370g00021	565	Pfam	Leucine Rich Repeat	142	164	IPR001611	GO:0005515
	Sebi370g00021	565	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	348	563	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi370g00021	Sebi-Chr370	360136	362779	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi370g00021	4	561	Receptor kinase-like Gene Family	AT3G47570	40.545	8.48e-139	426

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Sebi370g00021		Pkinase	1.5e-20	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi370g00021	-		-	gmx:100792724	689.493