Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi370g00019 ATGTATCAAAGAGTTACAGAGTTGAACCTAGAAGGATATCAGTTGCATGGATCCATATCTCCTCATGTTGGCAATCTCTCTTTTATGAGAAACTTCAATATCAGAAACAACAGCTTCCATGGAATAATCCCTCAAGAACTGTTCCATTTAGTGCAATTACAGCTACTTCATCTCAACAATAACTCCTTGGTTGGGGAAATTCCTACAAACTTGACAAGTTTGTCTGATCTCAAAGGCTTGTACTTGTCAGGGAACAATCTCATTGGCAGAATACCAATTGAAATTGGCTCTCTTAGGAAGCTCCAAGAAGTATTCATTTGGAACAACAAATTAACAGGGGAAATTCCACCTTCCTTGGGGAATCTTTCATCCCTTACTGTTCTTAATGTGGGTTCCAATAACTTGGAGGGAAATATTCCACAAGAAATATGCCTCTTGAAAAACTTGTCATCCATATCAGTGGGTATAAACAAACTATCTGGTAAACTTCCTTTCTGTCTTTACAATATGTCATCTCTCACTCTATTCTCTGTTGCTCTGAACCAATTTAATGGCTCTCTTCCACCCACAATGCTCAACACCCTTCCCAATCTCCAAACACTTTTCATTGGTGGGAACCAAATCTCAGGTCCAATCCCATCTTCCATCACAAATGCATCTGTCCTTCAAATGTTTGATATCACTCAAAACCATTTTGTTGGACAAGTTCCAAGTTTAGGAAAGCTAAAAGATCTTGGTCTCCTAGGTTTGTCTCAGAACAAGCTAGGAGATAACTCAACTAAAGATTTGGAGTTTTTAAAGTCATTGACAAATAGTAGTAAGTTGTATGTGGTTGATATATCCTACAACAATTTTGGAGGCCATTTACCAGATTCCTTGGGAAACATGTCAAACCAACTCAATAACCTATATCTTGGGGGCAATCATATATCAGGAAATATTCCTATGGCATTAGGAAATCTAGTTAGCTTATTTCTCTTGACCATGGAAAATAACCGTTTTGAAGGGACAATTCCAGCTACTTTTGGGAAGTTTCAAAAGATGCAAGTGTTAGAATTGAGTGGAAACCAATTGTCAGGAGATATACCAGCTTTCATAGGCAATCTCAGTCAGTTGTCTTATTTGGGTTTAGGACATAATATGTTAGAAGGAAATGTTCCTCCAAGTATAGGAAATTGTCAAAAGTTACAACACCTAGACCTTTCACACAACAACCTTAGAGGAACCATACCTGTGGAGGTTTTTAGTCTTTTCTCTTTAACAAACTTATTGGACTTGTCACAAAACTCATTTAGTGGTACTATAGTGGAAGAAGTAAGCATGCTAAAAAATATTGAAACATTGAATGTCTCTGAGAATCATCTGTCTGGTGATATTCCTAGAACCATTGGAGAATGCATAAGTTTGGAGTACCTTTATTTGCAAGGAAATTCCTTCAATGGAGTCATACCATCTTCTTTGGCTTCACTCAAAGGCCTTAGACGTTTAGACTTATCAAGAAACCGTTTGTCTGGATCAATTCCTGAAGGTCTACAGAATATTGCTTTCCTAGAATACTTCAATGTTTCTTTTAACATGTTGGATGGTGAGGTACCAACTAAAGGTGTCTTTCATAATGCAAGTGAGGTGGTGGTAACTGGAAACAATAACCTTTGTGGAGGTATTTCAAAGCTGCATCTACCACCATGCCCTGTCAAAGGTAAGGAACATGCAAAACATCATAGTCACAAGCTGATAGCAGTGATAGTTAGTGTGGTTGCTTTTCTTCTAATACTTCTATTTATTCTAACTATCTATTGTATGAGGAAAAGAAACAAGAAACCAACTATTGATTCACCAGAAATTGACCACCTGGCTAAGGTTTCATATGAAAACCTATACAATGGAACTGATGGATTCTCAACTAGAAACTTGATAGGATCTGGAAATTTTGGACATGTCTACATAGGAACTCTTGAGTCAGAAGATAGAGTTGTTGCCATAAAGGTCCTAAACCTTCAAAATAAGGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAATATTAGGCATCGAAATCTGGTTAAGATCTTAACATGCTGTTCTAGTACAGATTACAAAGGTCAAGAATTTAAAGCTTTGGTTTTTGAGTACATGAAAAATGGAAGCTTAGAGAGTTGGTTGCATCCAGAAACAGAAATTGCAGATCCACAAAAATCATTGAACCTTGAGGAAAGGTTAAATATTATTACTGATGTTGCTTTAGCATTTCATTATCTTCACTATGAATGTGAGGAGCCTGTAATTCATTGTGATTTAAAGCCTAGCAATGTTCTTCTTGATGAATGCATGGTAGCACACGTGAGTGATTTTGGCTTAGCAAGATTGCTCTCAAGTGTTGGAGTCTCTCTAATGCAAAGTAGCACAATTGGAATTAAGGGGACAGTTGGTTATGCACCTCCAGAGTATGGAATGGGTTCTGAGGTGTCAATTGAAGGCGACATTTATAGCTTTGGCATTCTAGTTTTAGAGATGTTAACCGGAAGGAGGCCAACAGATGAAATGTTTGAAGATGGTCATAATCTCCATAATTTTGTTAAAATTTCAATTTCAAATGACCTTTTGCATATAGTGGACCCAACTATTCTCCACAATGGATTAAAATGGGCTACTGACAGTGGGGACCTTGGCATTATACATCCTAATGTAGAGAAAAGTTTGCTTTCACTTTTTAGTATTGCACTTGCCTGTTCAGTGGAATCTCCAAAAGAAAGAATGAGTATGGTTGATGTCATAAGGGAGCTTAATATTATCAAGAGTTTCTTTCCTACTGGGTTTTAA 2829 0.3719 MYQRVTELNLEGYQLHGSISPHVGNLSFMRNFNIRNNSFHGIIPQELFHLVQLQLLHLNNNSLVGEIPTNLTSLSDLKGLYLSGNNLIGRIPIEIGSLRKLQEVFIWNNKLTGEIPPSLGNLSSLTVLNVGSNNLEGNIPQEICLLKNLSSISVGINKLSGKLPFCLYNMSSLTLFSVALNQFNGSLPPTMLNTLPNLQTLFIGGNQISGPIPSSITNASVLQMFDITQNHFVGQVPSLGKLKDLGLLGLSQNKLGDNSTKDLEFLKSLTNSSKLYVVDISYNNFGGHLPDSLGNMSNQLNNLYLGGNHISGNIPMALGNLVSLFLLTMENNRFEGTIPATFGKFQKMQVLELSGNQLSGDIPAFIGNLSQLSYLGLGHNMLEGNVPPSIGNCQKLQHLDLSHNNLRGTIPVEVFSLFSLTNLLDLSQNSFSGTIVEEVSMLKNIETLNVSENHLSGDIPRTIGECISLEYLYLQGNSFNGVIPSSLASLKGLRRLDLSRNRLSGSIPEGLQNIAFLEYFNVSFNMLDGEVPTKGVFHNASEVVVTGNNNLCGGISKLHLPPCPVKGKEHAKHHSHKLIAVIVSVVAFLLILLFILTIYCMRKRNKKPTIDSPEIDHLAKVSYENLYNGTDGFSTRNLIGSGNFGHVYIGTLESEDRVVAIKVLNLQNKGAHKSFIAECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMKNGSLESWLHPETEIADPQKSLNLEERLNIITDVALAFHYLHYECEEPVIHCDLKPSNVLLDECMVAHVSDFGLARLLSSVGVSLMQSSTIGIKGTVGYAPPEYGMGSEVSIEGDIYSFGILVLEMLTGRRPTDEMFEDGHNLHNFVKISISNDLLHIVDPTILHNGLKWATDSGDLGIIHPNVEKSLLSLFSIALACSVESPKERMSMVDVIRELNIIKSFFPTGF 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi370g00019 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672|GO:0006468
Sebi370g00019 942 Gene3D Ribonuclease Inhibitor 142 267 IPR032675 -
Sebi370g00019 942 Gene3D Ribonuclease Inhibitor 268 564 IPR032675 -
Sebi370g00019 942 Gene3D Ribonuclease Inhibitor 2 141 IPR032675 -
Sebi370g00019 942 Gene3D Phosphorylase Kinase; domain 1 614 714 - -
Sebi370g00019 942 ProSitePatterns Protein kinases ATP-binding region signature. 639 662 IPR017441 GO:0005524
Sebi370g00019 942 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 264 - -
Sebi370g00019 942 ProSiteProfiles Protein kinase domain profile. 633 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi370g00019 942 SMART serkin_6 633 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi370g00019 942 SUPERFAMILY L domain-like 300 553 - -
Sebi370g00019 942 ProSiteProfiles Leucine-rich repeat profile. 395 417 IPR001611 GO:0005515
Sebi370g00019 942 PANTHER LEUCINE RICH REPEAT KINASE 2 267 936 - -
Sebi370g00019 942 FunFam LRR receptor-like serine/threonine-protein kinase EFR 603 714 - -
Sebi370g00019 942 Pfam Protein kinase domain 635 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi370g00019 942 FunFam LRR receptor-like serine/threonine-protein kinase EFR 265 569 - -
Sebi370g00019 942 Gene3D Transferase(Phosphotransferase) domain 1 715 937 - -
Sebi370g00019 942 SMART LRR_sd22_2 195 221 - -
Sebi370g00019 942 SMART LRR_sd22_2 393 414 - -
Sebi370g00019 942 SMART LRR_sd22_2 490 513 - -
Sebi370g00019 942 SMART LRR_sd22_2 345 371 - -
Sebi370g00019 942 PRINTS Leucine-rich repeat signature 396 409 - -
Sebi370g00019 942 PRINTS Leucine-rich repeat signature 490 503 - -
Sebi370g00019 942 SUPERFAMILY Protein kinase-like (PK-like) 609 933 IPR011009 -
Sebi370g00019 942 Pfam Leucine rich repeat 468 527 IPR001611 GO:0005515
Sebi370g00019 942 Pfam Leucine rich repeat 347 406 IPR001611 GO:0005515
Sebi370g00019 942 SMART LRR_typ_2 394 417 IPR003591 -
Sebi370g00019 942 SMART LRR_typ_2 195 219 IPR003591 -
Sebi370g00019 942 SMART LRR_typ_2 490 513 IPR003591 -
Sebi370g00019 942 SMART LRR_typ_2 50 74 IPR003591 -
Sebi370g00019 942 SMART LRR_typ_2 442 466 IPR003591 -
Sebi370g00019 942 SMART LRR_typ_2 369 393 IPR003591 -
Sebi370g00019 942 SMART LRR_typ_2 122 146 IPR003591 -
Sebi370g00019 942 SUPERFAMILY L domain-like 3 255 - -
Sebi370g00019 942 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 715 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi370g00019 Sebi-Chr370 310708 313641 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi370g00019 3 938 Receptor kinase-like Gene Family AT3G47570 46.365 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi370g00019 Pkinase 6.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi370g00019 - - gmx:100792724 1330.85