Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi36g00126 ATGCATAGAGGTAATGAGGTGAGAGTAATTAGGGGTATGAGGGATGTAGCACATCCAACTGGGAAGGTATATGTCTATGATGGTCTTTACAAGATTCAGGATTCGTGGGTGGAGAAAGCAAAATCCGGCTTCAATGTATTTAAGTATAAACTAGTCAGGTTGCCTGGGCAGCCTGAAGCATATATGGTGTGGAAATCCATTCAACAATGGACTGAGAAGTCTGTTTCAAGATCGGGGGTTATACTTCCTGATCTTACATCTGGGGCTGAAAATTTACCTGTTTGTCTTGTAAATGATGTTGATAATGAGAAGGGCCCTGCATATTTCACTTACTCCCCTACTCTCAAGAATTTGAAGCCAATAGCTCCTGTGGAATCTTCTGCTGGATGTTCTTGTGTTGGCGGATGCCAGATTGGCAATTTTAACTGTACTTGCATTCAAAAGAATGAAGGTTATCTCCCATATTCTGCAACTGCAGTACTTGCGGATCTAAAATCTGTGGTATATGAGTGTGGTCCTTCTTGTCAGTGCCCTCCTAATTGCCGAAATCGGGTTTCCCAAGGTGGCTTGAAACTTCGTTTGGAGGTGTTTAGAACCAAGGATAAAGGTTGGGGTCTAAGATCATGGGATCCTATTCGTGCTGGAGCTTTCATATGTGAGTATGCAGGGGAAGTCATAGATAATGCTAGAGTAGAGGAGCTTGGTGGTGAAAATGAAGATGACTACATTTTTGACTCTACTCGTATATATCAGCAACTGGAAATTTTTCCCGGTGACACTGAAGCACCAAAGATCCCATTCCCCCTTTATATAACAGCCAAAAATGAAGGCAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTATTATGGCGCCCAGTCTTACGCGAAAACAAGAATGAATCAGATCTCCACATTGCTTTCTACGCAATTAGACATATCCCTCCTATGGTAGAGTTAACCTATGATTATGGAATTGTTCTTCCTCTCAAAGTAGGTCAGAAGAAGAAGAAATGCTTGTGTGGATCTGTGAGATGCAGGG 1048 0.4227 MHRGNEVRVIRGMRDVAHPTGKVYVYDGLYKIQDSWVEKAKSGFNVFKYKLVRLPGQPEAYMVWKSIQQWTEKSVSRSGVILPDLTSGAENLPVCLVNDVDNEKGPAYFTYSPTLKNLKPIAPVESSAGCSCVGGCQIGNFNCTCIQKNEGYLPYSATAVLADLKSVVYECGPSCQCPPNCRNRVSQGGLKLRLEVFRTKDKGWGLRSWDPIRAGAFICEYAGEVIDNARVEELGGENEDDYIFDSTRIYQQLEIFPGDTEAPKIPFPLYITAKNEGNVARFMNHSCSPNVLWRPVLRENKNESDLHIAFYAIRHIPPMVELTYDYGIVLPLKVGQKKKKCLCGSVRCR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi36g00126 349 SMART set_7 192 333 IPR001214 GO:0005515
Sebi36g00126 349 Pfam SAD/SRA domain 1 57 IPR003105 -
Sebi36g00126 349 SUPERFAMILY SET domain 68 333 IPR046341 -
Sebi36g00126 349 Gene3D SET domain 78 349 IPR046341 -
Sebi36g00126 349 ProSiteProfiles Post-SET domain profile. 337 349 IPR003616 -
Sebi36g00126 349 SMART G9a_1 1 57 IPR003105 -
Sebi36g00126 349 SUPERFAMILY PUA domain-like 2 87 IPR015947 -
Sebi36g00126 349 ProSiteProfiles YDG domain profile. 1 53 IPR003105 -
Sebi36g00126 349 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 345 - -
Sebi36g00126 349 SMART preset_2 82 176 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi36g00126 349 ProSiteProfiles SET domain profile. 192 327 IPR001214 GO:0005515
Sebi36g00126 349 Gene3D - 1 77 IPR036987 -
Sebi36g00126 349 Pfam Pre-SET motif 86 184 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi36g00126 349 ProSiteProfiles Pre-SET domain profile. 128 189 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi36g00126 349 Pfam SET domain 203 327 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi36g00126 Sebi-Chr36 2853111 2854158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi36g00126 1 349 Su(var)3-9 homologs AT1G73100 56.164 5.86e-146 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi36g00126 SET 8.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi36g00126 K24405 - gmx:100786650 661.373