Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi36g00111 ATGGCAGCCTCTGAAGGCTCTAGCATCTCTGCCACTTCACAGGGCATTTCCCACAAAGCTGTTGATGAAGATAGCAACGTGGCAAAAATGAAGGAGAAGGGTGTAAAAAATGAACAAGATAAGGCCTCAAACTCTAATTCCCACAAGCATTTTGATTTTGTGCAACTCTCAAAAGATGATTCTGTTTGTGGATCTAAGGTGCAAGAACTAGATTTCTTCAACAGTGCAGGAAAAAATGTGGTGGGTTCATCATCTTGTGGGGCTAACAACAACAACAATGATCAAGGGAGAGAGGAGAACACTGAGGAAAAATCCTCAGAGTCAAAGACTTTCACATGCAACTTTTGCAAGAGAAAATTCTCTTCTTCACAGGCCTTAGGAGGACACCAAAATGCTCACAAGCCAGAGCGTGCACTTGCAAAGCGTCGCCAAGAGATGCAAAATGCTGGTGCTTTTGGGCACCCTCATCACTTTTCATATTACACTTATCCTAGTCTTTCTACATCACCTTATTATGCATCTTATAATAAAGCACTTGGGATCAGAATGGATTCTATGATTCATAAGCCAAACTATCTGCATACCCCACCTGGCTTGAGGTATGGTCATGGACATGGTCATGCTGGTGCTTGGCCATCAATGCAAGAGATGCTAAACCTTTCTTCTGTTGATAGATTGAGAATGGAGGGTTTCAATTCAAATAGTGGAAATGGGATTCTAGGGAGTGGAACTTCGAATATAGAAGATCATGGTGGTAGTACTGTTCCATCTGTTCTCCAATTTGGAGATTCTTCTGCAAATGCTGCTAAGGGGTCAAACTCAAACATAGACAAGGCAACTCAGCCTACCACTGGTGATCATCATCATTCCAATATTAACATTGAAGAACCCTCCAATTCTGAATCTTCTGGACTTGATTTGTCACTCAAGCTTTAA 936 0.4177 MAASEGSSISATSQGISHKAVDEDSNVAKMKEKGVKNEQDKASNSNSHKHFDFVQLSKDDSVCGSKVQELDFFNSAGKNVVGSSSCGANNNNNDQGREENTEEKSSESKTFTCNFCKRKFSSSQALGGHQNAHKPERALAKRRQEMQNAGAFGHPHHFSYYTYPSLSTSPYYASYNKALGIRMDSMIHKPNYLHTPPGLRYGHGHGHAGAWPSMQEMLNLSSVDRLRMEGFNSNSGNGILGSGTSNIEDHGGSTVPSVLQFGDSSANAAKGSNSNIDKATQPTTGDHHHSNINIEEPSNSESSGLDLSLKL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi36g00111 311 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 311 IPR044246 GO:0009788
Sebi36g00111 311 MobiDBLite consensus disorder prediction 242 311 - -
Sebi36g00111 311 MobiDBLite consensus disorder prediction 1 20 - -
Sebi36g00111 311 Gene3D Classic Zinc Finger 91 153 - -
Sebi36g00111 311 MobiDBLite consensus disorder prediction 242 288 - -
Sebi36g00111 311 SUPERFAMILY beta-beta-alpha zinc fingers 108 138 IPR036236 -
Sebi36g00111 311 MobiDBLite consensus disorder prediction 1 48 - -
Sebi36g00111 311 MobiDBLite consensus disorder prediction 295 311 - -
Sebi36g00111 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Sebi36g00111 311 MobiDBLite consensus disorder prediction 83 107 - -
Sebi36g00111 311 MobiDBLite consensus disorder prediction 22 48 - -
Sebi36g00111 311 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi36g00111 Sebi-Chr36 2433140 2434075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi36g00111 105 190 C2H2 Transcription Factor Family AT5G10970 55.172 5.78e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi36g00111 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi36g00111 - - lja:Lj1g3v2534910.1 271.552