LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi36g00106	ATGGAGATTGAAGCTGACTCAAGAGATGGCTCTCTCATTCTGATCAAGCAAGGAGCTGAAGCTAGGGTTTTTGAGTCTTCTTTTGTAGGAAGGAGGTCTGTTATCAAGGAGCGCTTCTCAAAGAAGTACAGGCATCCAATTTTGGATTCTAAATTGACACTCAAGCGCTTAAATGCGGAGGCTAGGTGCACGACCAAAGCAAGACGACTAGGGGTTTGTACTCCTGTGCTGTATGCCGTGGATCCTGTGTTGCACACTTTAACATTTGAATATGTTGAGGGCCCTTCAGTCAAGGATGTATTTCTTGACTTCGGGTCAAGTGGTGTCATTGAAGAACGGATGGACAACATTGCATCCCAAATTGGTGATGCAATTGGAAAATTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTACTGAAGAATGATACCAATCAGTTGGTTCTTATTGACTTTGGTTTGAGCTTCACCTCGACTCTACCGGAAGATAAAGCTGTCGATTTGTATGTCCTGGAAAGAGCCATTCTTTCAATGCATTCTTCATGTGGGAATGTGATGGATAAGATACTTGCTGCATACCGCAAGTCATCAAAGCAGTGGTCATCCACATTGAACAAGCTGGCGCAAGGTACTGCCTTCCCTCTTATACTTGTTGGAAATTAA	678	0.4277	MEIEADSRDGSLILIKQGAEARVFESSFVGRRSVIKERFSKKYRHPILDSKLTLKRLNAEARCTTKARRLGVCTPVLYAVDPVLHTLTFEYVEGPSVKDVFLDFGSSGVIEERMDNIASQIGDAIGKLHDGGLIHGDLTTSNMLLKNDTNQLVLIDFGLSFTSTLPEDKAVDLYVLERAILSMHSSCGNVMDKILAAYRKSSKQWSSTLNKLAQGTAFPLILVGN	225

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi36g00106	225	FunFam	Protein kinase superfamily protein	107	216	-	-
	Sebi36g00106	225	Gene3D	Transferase(Phosphotransferase) domain 1	103	217	-	-
	Sebi36g00106	225	Pfam	Protein kinase domain	55	161	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi36g00106	225	FunFam	TP53-regulating kinase isoform X1	20	92	-	-
	Sebi36g00106	225	SMART	serkin_6	9	221	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi36g00106	225	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	6	214	IPR022495	GO:0004674
	Sebi36g00106	225	SUPERFAMILY	Protein kinase-like (PK-like)	14	174	IPR011009	-
	Sebi36g00106	225	ProSiteProfiles	Protein kinase domain profile.	9	225	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi36g00106	225	NCBIfam	KEOPS complex kinase/ATPase Bud32	18	212	IPR022495	GO:0004674
	Sebi36g00106	225	Gene3D	Phosphorylase Kinase; domain 1	20	92	-	-
	Sebi36g00106	225	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	133	145	IPR008266	GO:0004672\|GO:0006468

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi36g00106	15	167	MAP Kinase Kinase Kinase	AT5G50180	26.380	1.15e-06	46.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Sebi36g00106		Pkinase	5.1e-11	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi36g00106	K08851		-	csin:114273394	387.497