LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi36g00092	ATGAGCAGAATTCTCCTTCTCCCTATATTGCTATTCCTAATCATCTTACTTCACCCCTCTGAAGCCGACGAAGTTGCCGTTTACTGGGGTCAAAACACCAATGAGGGAAACCTTACTGAAACATGCTTAACAGGGAAATACTCTTATGTCAACATAGCCTTCCTTTCCACCTTTGGGAATGGCCAAACTCCTCAAATCAACCTGGCAGGTCATTGTGACCCTTCTTCTAATGGTTGCACTAAGATTGGGACAGACATTAAGAATTGCCAAAAGAAAGGGATCAAGGTGATGCTCTCCATTGGAGGAGGAACTGACACCTATTCTCTATCTTCCTCTGAGGATGCTAAAATTGTTTCAGATTACTTGTGGAACAATTTCTTGGGTGGCTCCTCCTCATCACGCCCACTTGGGGATGCAGTATTAGATGGCATTGATTTTGACATACAGCTAAGTACATCGCATGTGGATGATCTTGCACTTTACCTAAAGTCACACACAACAAGAAATCAGACTGTGTACTTATCTGCAGCACCTCAGTGTCCATTTCCTGATTCTTCACTGGGTAAGGCCCTTAATACTAGCCTTTTTGAGTATGTCTGGGTACAATTCTACAATAATCCTCCATGTGATTATACACAAGGAAATTTCGATAACTTTGTAAGTACATGGAACCTATGGACGACAATTTTAGATGGATCGAAAATTTTTTTGGGGTTGCCAGCAGCTGAAGAAGCAGCTGCAAGCGGTTATGTTCCACCTGGTGTATTAACATCTAAGATCTTACCTGTTATAAAGAAGTCACCAAACTATGGAGGAGTAATGTTGTGGTCAAGAAGCCATGACGGTGGTTTCGTGGAGCGTTTTGGTTACATGTCCACGGTTGGCATCAAAGTTTATGATGGCTTGAACAATGGTACCAATTGCTGTGAGATCATATGTAGGAACAATTGTTCCTGCAATGCGTATGCCTCAATAAATCACGTGAACAACACTGGATGCCAGATTTGGGGCAAAGGATCGAAATTCATTAGTGATTCTGGGGGAAAAGCACAGCCAATCTACATTGTTAAACACAAAGTAAACAGGTGGTGGATATGGCTCATCATTGGGGTGGGAGCAGCCTTTGCAATACCTGTGATCTTCTATTTATGTTGTGCCTTGTGGAGAAAATATAAAGCACAAGTGGATAGAAAAATAATGCAGAAGGAGATATTACATGAGATTGGTGGTAATGCAATGCTTTCAATGGTGTACGGCAAAGTCAAGAAAAGTAAGAACAGGGAAAAGACAAGCAACGAGGTCCAAATATTCACTTTTGAAACCATTGTTGCTGCCACAAACAATTTCTCAGTTGCTAATAAGCTAGGAAAGGGTGGTTTTGGTCCTGTTTATAAGGGAACATTGAGTGATCAGCAAGAGGTAGCAATAAAGCGACTTTCTAAAAGTTCAGGACAGGGGCTGATAGAGTTTAAGAATGAAGCTAAGCTCATGGCCAAACTCCAGCACACTAATCTTGTAAAGCTTTTAGGCATCTGCATCCAGAGAGATGAAAGAATATTAGTCTATGAGTACATGTCTAACAAGAGCTTAGACTTCTACCTATTTGATTCAATTAGAAAGAATTTGCTAGACTGGAAAAAACGCTTGAATATCATTGGAGGCATTGCTCAAGGACTTCTTTATCTCCACAAGTATTCAAGACTAAAGGTGATACATCGGGACCTGAAAGCAGCCAATATATTACTTGATGAAGAGATGAATCCAAAAATATCTGACTTTGGCATGGCTAGAATATTTGGTCTAAGAGCATCAGAAGAAAACACAAACAGAGTTGTTGGTACATATGGTTATATGGCTCCAGAGTATGCAATAAATGGTATTGTGTCTATCAAAATAGATGTATTTAGCTTTGGTGTATTGCTATTAGAGATTCTCAGTAGCAAGAAGAATAATAGTCGCTATCATTCAGATCGCCCACTCAGCCTCATAGGATTTGCATGGCAGCTCTGGAATGAAGGTAAACCTCTTGAGCTAGTAGACCCAGCATTAAGTGAATTAAGTTCTCAGAATGAAGTTTTGAGATGTATTCATATTGGCCTCTTGTGTGTACAAGATCAAGCAAATGATAGGCCTACCATGTTAGATATTGTTTCTTTTTTATCAAATGATACTATCCAACTTCCCCAACCAAAGCAGCCAGCATTCTTCATCAATGTGGTTGTAGAGGAGTCAGAGCTTCCTTATAGCAGGCAAGAACATCATTCCTTAAATAGTATAACAATTTCTAATATGTCTGGAAGATAA	2304	0.3993	MSRILLLPILLFLIILLHPSEADEVAVYWGQNTNEGNLTETCLTGKYSYVNIAFLSTFGNGQTPQINLAGHCDPSSNGCTKIGTDIKNCQKKGIKVMLSIGGGTDTYSLSSSEDAKIVSDYLWNNFLGGSSSSRPLGDAVLDGIDFDIQLSTSHVDDLALYLKSHTTRNQTVYLSAAPQCPFPDSSLGKALNTSLFEYVWVQFYNNPPCDYTQGNFDNFVSTWNLWTTILDGSKIFLGLPAAEEAAASGYVPPGVLTSKILPVIKKSPNYGGVMLWSRSHDGGFVERFGYMSTVGIKVYDGLNNGTNCCEIICRNNCSCNAYASINHVNNTGCQIWGKGSKFISDSGGKAQPIYIVKHKVNRWWIWLIIGVGAAFAIPVIFYLCCALWRKYKAQVDRKIMQKEILHEIGGNAMLSMVYGKVKKSKNREKTSNEVQIFTFETIVAATNNFSVANKLGKGGFGPVYKGTLSDQQEVAIKRLSKSSGQGLIEFKNEAKLMAKLQHTNLVKLLGICIQRDERILVYEYMSNKSLDFYLFDSIRKNLLDWKKRLNIIGGIAQGLLYLHKYSRLKVIHRDLKAANILLDEEMNPKISDFGMARIFGLRASEENTNRVVGTYGYMAPEYAINGIVSIKIDVFSFGVLLLEILSSKKNNSRYHSDRPLSLIGFAWQLWNEGKPLELVDPALSELSSQNEVLRCIHIGLLCVQDQANDRPTMLDIVSFLSNDTIQLPQPKQPAFFINVVVEESELPYSRQEHHSLNSITISNMSGR	767

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi36g00092	767	Gene3D	Glycosidases	23	286	-	-
	Sebi36g00092	767	Gene3D	Transferase(Phosphotransferase) domain 1	525	731	-	-
	Sebi36g00092	767	SUPERFAMILY	(Trans)glycosidases	20	281	IPR017853	-
	Sebi36g00092	767	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	525	728	-	-
	Sebi36g00092	767	ProSiteProfiles	Protein kinase domain profile.	449	725	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi36g00092	767	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	209	747	-	-
	Sebi36g00092	767	SMART	serkin_6	449	720	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi36g00092	767	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	414	524	-	-
	Sebi36g00092	767	Pfam	Protein tyrosine and serine/threonine kinase	451	720	IPR001245	GO:0004672\|GO:0006468
	Sebi36g00092	767	Pfam	Glycosyl hydrolases family 18	25	281	IPR001223	GO:0005975
	Sebi36g00092	767	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	570	582	IPR008271	GO:0004672\|GO:0006468
	Sebi36g00092	767	FunFam	Acidic endochitinase SE2	23	298	-	-
	Sebi36g00092	767	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	23	301	IPR001223	GO:0005975
	Sebi36g00092	767	CDD	GH18_hevamine_XipI_class_III	24	281	IPR045321	-
	Sebi36g00092	767	Gene3D	Phosphorylase Kinase; domain 1	422	524	-	-
	Sebi36g00092	767	Pfam	Domain of unknown function (DUF3403)	722	767	IPR021820	GO:0004674
	Sebi36g00092	767	Pfam	PAN-like domain	304	337	IPR003609	-
	Sebi36g00092	767	CDD	STKc_IRAK	455	720	-	-
	Sebi36g00092	767	SUPERFAMILY	Protein kinase-like (PK-like)	431	752	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi36g00092	Sebi-Chr36	2107237	2110504	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi36g00092	10	294	Glycoside Hydrolase	AT5G24090	61.034	7.13e-126	376

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Sebi36g00092		PK_Tyr_Ser-Thr	2e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi36g00092	-		-	lang:109358482	1208.36