Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi36g00040 ATGACACTGCAAAAGATCAACACGAATGATGACCTTCAACTAGGGGTGGAGAAAAGTTCTGCAAAGATCCTGATGGATGTTACTTCTCTTGGTCCAAATAGAAACATCCAAACCGAACAACATCCTTTGCTGATGGAGCAGCCAGAAACCCGCAATGGCCATCAGCACATAATTGACATTACAAGGAATGATGAAGCATTATCCACATCATCTCATAATGATCAACTCCCTGAAATGCATTTACCACAGAATGAAGATCAACCAGCTGGGGGCACACAAGATTCCACTCATCAAACATCTTCATCTTCTGCATCCAGATTTAACTCTAGAAATTCCTCTTCGTTTAGAAGAGGTGAGGGATATGGTCATCGCAGAAGGAGTCCATTGAATTCTGCACTATGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTATCGTGGTTTTGTCATTATCCAGGAATGAAAATCCCCAAGCCCCATTATTTGCATGGATTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCTATTCTTTACTGGCGTTTTCGAAACCGTAATCAAAGCACTGATCAACATACCTCTCAACCATCTCAAGGATCATCTGGAAGCAATCCTCCAGAAAGTACTTATACTGCCATCTCTGTTTCTCATGTTTCAGATGAGGACAATGGCCATGCTACACAATCAGCAGCAAGAAACACTATAATTCCTGGAGCCTTTACTTCTAGGCTCAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCACCACAATTATATAGGTTGTGTATTGTGTTTCTTACCTTTAGCTGTATCGGATATGCTATGCCATTTATACTCTGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACAGTAGAATCTATTAATGCTCTTCCAATCTATAAGTTCAAATTGAAGAACAGTGAAAATAGTGATGATCAGGATATCAATGCAGCTATAGATGAAGGTGGGATTTTGGCTGCAGGGACAGAAAATGAACGGGTGATTTCAGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGCAGATGATGATGAGCTTAGGGAGTTACCTTGCTCTCATGTCTTTCACGTAGGGTGTGTTGATAAATGGTTAAAGATAAATGCATCCTGCCCTCTTTGTAAAAGTGAAGTTGGCACGAGTAATGGAGAGTCACCTTCACCCTGGGACTCCAATGCGCATTAG 1350 0.4133 MTLQKINTNDDLQLGVEKSSAKILMDVTSLGPNRNIQTEQHPLLMEQPETRNGHQHIIDITRNDEALSTSSHNDQLPEMHLPQNEDQPAGGTQDSTHQTSSSSASRFNSRNSSSFRRGEGYGHRRRSPLNSALWISVELVVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRNQSTDQHTSQPSQGSSGSNPPESTYTAISVSHVSDEDNGHATQSAARNTIIPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIYKFKLKNSENSDDQDINAAIDEGGILAAGTENERVISGEDAVCCICLAKYADDDELRELPCSHVFHVGCVDKWLKINASCPLCKSEVGTSNGESPSPWDSNAH 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi36g00040 449 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 45 433 - -
Sebi36g00040 449 SMART ring_2 389 429 IPR001841 -
Sebi36g00040 449 MobiDBLite consensus disorder prediction 67 125 - -
Sebi36g00040 449 SUPERFAMILY RING/U-box 381 437 - -
Sebi36g00040 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 438 IPR013083 -
Sebi36g00040 449 SMART ringv_2 388 430 IPR011016 GO:0008270
Sebi36g00040 449 FunFam E3 ubiquitin-protein ligase 372 439 - -
Sebi36g00040 449 Pfam Ring finger domain 389 430 IPR001841 -
Sebi36g00040 449 MobiDBLite consensus disorder prediction 67 116 - -
Sebi36g00040 449 MobiDBLite consensus disorder prediction 193 214 - -
Sebi36g00040 449 ProSiteProfiles Zinc finger RING-type profile. 389 430 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi36g00040 Sebi-Chr36 984118 990006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi36g00040 25 440 C3H Transcription Factor Family AT1G80400 57.720 2.80e-169 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi36g00040 - - gmx:100819729 742.651