Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi36g00039 ATGCAAACGAAGAATCAAGTTGTAGGGTGGCCTCCAGTGTGTTCCTACCGGAAGAAGAATAGCATGAATGAAGCCTCCAAAATGTACGTCAAAGTTAGCATGGATGGGGCTCCTTTCTTGCGTAAAATTGATTTGGGTATGCATAAGGGATACTCTGAGTTAGCCTTTGCCTTGGAGAAGCTCTTTGGTTGCTATGGAATCGGGGAGTCGTTAAAGGATGGAGACAATTCAGAACACGTTCCCATCTACGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCCTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTTGATTTGCAACCAAAAGGATCGTTAAAGGGATTTATAGAAGACGTGACAAAATGA 411 0.4428 MQTKNQVVGWPPVCSYRKKNSMNEASKMYVKVSMDGAPFLRKIDLGMHKGYSELAFALEKLFGCYGIGESLKDGDNSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLKGFIEDVTK 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi36g00039 136 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 117 IPR003311 GO:0005634|GO:0006355
Sebi36g00039 136 Pfam AUX/IAA family 3 119 IPR033389 -
Sebi36g00039 136 FunFam Auxin-responsive protein 22 123 - -
Sebi36g00039 136 SUPERFAMILY CAD & PB1 domains 20 112 - -
Sebi36g00039 136 Gene3D - 21 124 - -
Sebi36g00039 136 ProSiteProfiles PB1 domain profile. 27 115 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi36g00039 Sebi-Chr36 952385 956192 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi36g00039 19 134 B3 DNA Binding Superfamily AT4G23980 33.621 1.56e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi36g00039 AUX_IAA 2.5e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi36g00039 K14484 - gmx:100811879 253.062