Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi36g00029 ATGAGTGGGGCTGCGTTGAGTGGCCTGCAAGAGCACCTGAAATTGGCCAGAGAATACGCTGTCGAAGGAATCTACGACACCTCAATCATCTTCTTCGACGGCGCCATAGCCCAGATCAACAAGCACCTGAACAGTGTGGATGACCCTTTAATCCGTGCCAAGTGGATGAACGTGAAGAAAGCCCTGTCTGAGGAAACGGAAGTTGTGAAGCAACTAGATACCGAGCGAAGGGCATTTAAGGAAACCCACATTACTTCTTCATTGTCTGGTAGTAGTAAATCCTCGTTTGTTTTTCAACCGTTGGATGAGTATCCCACTTCCTCTTCCTCCTTTTCATCGCCGTTTGATGATCCTGACGTCTGGAGGCCACCTAGCAGGCCCGCAAGGCCCACTACCCGCAAAGATGGGTCCTGGGCTCGAGGTTCTACCAGAAATGCCACCACAACTGGCCGTGGCCCAAAGCCTGCTGCTGCAACTAGGCCCAACTCAGCACCCCGACCAAAGAAAGGCACTGCTTCGGGAAAGTCTAGCAAGGTAGATTCGCTGAATGGTGAGGATGGGAAGTCAAAGAGGACACAATATGAAGGTCCTGATCCTGACTTGGCGGAAATGCTTGAAAGGGATGTGTTAGAAACATCTCCTGGTGTGAGATGGGATGACGTGGCAGGGCTCAATGAAGCCAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTATGGATGCCCGAATATTTCCAGGGAATTAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGTCCTCCAGGAACTGGGAAAACGCTTCTTGCTAAAGCAGTTGCTACTGAATGTGGTACCACTTTCTTTAATGTTTCTTCTGCTACTTTGGCTTCTAAATGGCGTGGAGAGAGTGAGCGTATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCCAGGGGGGCTTCCGGGGAGCATGAATCTTCCAGGAGGGTAAAATCTGAACTTCTAGTTCAAGTTGATGGTGTAAATAATAGTTCCACAAATGAAGATGGTACCCGTAAAATAGTAATGGTTTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTGAGGAGAAGGCTGGAAAAGCGTATATACATTCCTCTTCCAAATTTCGAGAGTCGTAAAGAGCTGATCCATATCAATTTGAAGACTGTGTCCCCTGATGTCAATATAGATAAAGTGGCACGCCGGACAGAGGGCTATAGTGGAGATGACTTAACAAATGTATGCCGTGATGCTTCTCTGAATGGAATGAGGCGTAAGATAGCGGGGAAGACTCGTGATGAGATAAAGAACATGTCCAAGGATGAGATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGAAGAAAGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTGCTGAATTTGGATCAGCATAA 1506 0.4695 MSGAALSGLQEHLKLAREYAVEGIYDTSIIFFDGAIAQINKHLNSVDDPLIRAKWMNVKKALSEETEVVKQLDTERRAFKETHITSSLSGSSKSSFVFQPLDEYPTSSSSFSSPFDDPDVWRPPSRPARPTTRKDGSWARGSTRNATTTGRGPKPAAATRPNSAPRPKKGTASGKSSKVDSLNGEDGKSKRTQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLNEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIHINLKTVSPDVNIDKVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALKKVQRSVSQADIERHEKWFAEFGSA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi36g00029 501 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Sebi36g00029 501 CDD Kp60-NTD 7 75 - -
Sebi36g00029 501 Gene3D - 3 80 - -
Sebi36g00029 501 Pfam Vps4 C terminal oligomerisation domain 454 499 IPR015415 -
Sebi36g00029 501 FunFam Katanin p60 ATPase-containing subunit A1 393 477 - -
Sebi36g00029 501 PANTHER AAA DOMAIN-CONTAINING 25 500 - -
Sebi36g00029 501 MobiDBLite consensus disorder prediction 106 201 - -
Sebi36g00029 501 FunFam Katanin p60 ATPase-containing subunit A1 213 381 - -
Sebi36g00029 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 487 IPR027417 -
Sebi36g00029 501 ProSitePatterns AAA-protein family signature. 364 383 IPR003960 GO:0005524|GO:0016887
Sebi36g00029 501 Gene3D - 393 477 - -
Sebi36g00029 501 Gene3D - 213 492 IPR027417 -
Sebi36g00029 501 SMART AAA_5 251 394 IPR003593 GO:0016887
Sebi36g00029 501 MobiDBLite consensus disorder prediction 136 152 - -
Sebi36g00029 501 MobiDBLite consensus disorder prediction 181 201 - -
Sebi36g00029 501 Pfam AAA+ lid domain 412 453 IPR041569 -
Sebi36g00029 501 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 501 IPR028596 GO:0008017|GO:0008568|GO:0051013
Sebi36g00029 501 Pfam ATPase family associated with various cellular activities (AAA) 255 392 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi36g00029 Sebi-Chr36 641849 644552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi36g00029 207 493 Calmodulin-binding Proteins AT3G56690 40.268 1.93e-50 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi36g00029 K07767 - zju:112489859 822.772