Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi369g00038 ATGCAACAATCAAACGGTTCTGATTCATCGCAACAGCAACAGCAACACTCGTCGGAGCAGAACAAACAACAACGCCAACCGCCGCCGCCGCAGGCTCAGCCAGTGGCGGTGCCGCCTCAGTGGGTGCCGATGCAGTATCCGGTGGTAATGCCGCACCACATGTTGCCGCCTCAACATTACGCGCCGCCGCCTTACGTGCCTTACCACCACCAGTATCAGCAGCTACCACCGCACGTGCCACATCAGCATCAGCATCAACACCAGCATGGATCCAACGGCGAGAACAAGACTATTTGGGTCGGTGATTTGCATCACTGGATGGACGAGAATTATCTCCATCGCTGCTTCGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGCCACGGCTGAGAAAGTTTTGCAGAATTATGCTGGAATGATGATGCCCAACACAGAGCAACCTTTCCGTCTGAACTGGGCAACATTTAGCACGGGAGACAAGAATTCAGATAATGCTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACTGATAGTTTGTTGCATGAAACTTTTGCTAGTAAATACCCTTCTGTTAAAGCTGCAAAAGTTGTCTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGATCCCAGGCCATGACTCATATGAATGGTGTTTACTGTTCTAGCAGACCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAAGGAGGCCAGTCAAATGGCACATCCGGCCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTCACAGATGAAGATCTTAGGCAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCCGTAGGTAAGGGGTGTGGTTTTGTCCAATTTGCAAACAGCCCCTGGAGTGGGGCTTATTATGGTGGCCCTATTTATGATGGTTATGGATATGCAATGCCGCCTCCTAATGACCCAAGCATGTATGCTGCTGCTTATGGGGCTTACCCTGTTTATGGAGGCCACCAACAGCAAGTAAACTGA 1158 0.481 MQQSNGSDSSQQQQQHSSEQNKQQRQPPPPQAQPVAVPPQWVPMQYPVVMPHHMLPPQHYAPPPYVPYHHQYQQLPPHVPHQHQHQHQHGSNGENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGMMMPNTEQPFRLNWATFSTGDKNSDNAPDLSIFVGDLAADVTDSLLHETFASKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTHMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSGQSEADSTNTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANSPWSGAYYGGPIYDGYGYAMPPPNDPSMYAAAYGAYPVYGGHQQQVN 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi369g00038 385 Gene3D - 265 340 IPR012677 -
Sebi369g00038 385 MobiDBLite consensus disorder prediction 264 301 - -
Sebi369g00038 385 MobiDBLite consensus disorder prediction 1 37 - -
Sebi369g00038 385 FunFam Polyadenylate-binding protein RBP47C isoform A 188 264 - -
Sebi369g00038 385 SUPERFAMILY RNA-binding domain, RBD 188 338 IPR035979 GO:0003676
Sebi369g00038 385 MobiDBLite consensus disorder prediction 269 300 - -
Sebi369g00038 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 176 IPR000504 GO:0003723
Sebi369g00038 385 CDD RRM2_SECp43_like 188 267 - -
Sebi369g00038 385 CDD RRM1_SECp43_like 97 177 - -
Sebi369g00038 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 338 IPR000504 GO:0003723
Sebi369g00038 385 MobiDBLite consensus disorder prediction 1 26 - -
Sebi369g00038 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Sebi369g00038 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 339 IPR000504 GO:0003723
Sebi369g00038 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 260 IPR000504 GO:0003723
Sebi369g00038 385 SUPERFAMILY RNA-binding domain, RBD 60 178 IPR035979 GO:0003676
Sebi369g00038 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 268 IPR000504 GO:0003723
Sebi369g00038 385 Gene3D - 95 175 IPR012677 -
Sebi369g00038 385 SMART rrm1_1 190 264 IPR000504 GO:0003723
Sebi369g00038 385 SMART rrm1_1 97 172 IPR000504 GO:0003723
Sebi369g00038 385 SMART rrm1_1 295 358 IPR000504 GO:0003723
Sebi369g00038 385 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 85 338 - -
Sebi369g00038 385 Gene3D - 188 264 IPR012677 -
Sebi369g00038 385 FunFam Polyadenylate-binding protein RBP47C isoform A 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi369g00038 Sebi-Chr369 924121 927812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi369g00038 95 339 Eukaryotic Initiation Factors Gene Family AT4G34110 28.458 6.79e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi369g00038 - - gmx:100801446 560.066