Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi368g00028 ATGAAAGAGGAAATCAAGTCAGAGTTCAGAAAAAGCGGGTTTGATCTTGATGAAGAAGAAGAAATACTGAATAAATGTCTCACTTTCTGCATCAACTACAGTCTCAGCCCTTCCGATCTCGTCTCAAGCTGGGAAGTTTATTACCTGAATAGGTTTGTGTCTTCTGCTTCAGTGAGTGTTGTCACTTACGGTCAAAATTGCCCCCCTAAACTACTGAACGGATCGACCGTACAAAATGCTGAAATGGATGGCTTTCTGCTGCATCTACAAAATAATAAGAAAGAAGATGTTATAATGGAGGAAGCTGGTTTGCATACTTACTCTATCAGAGATGCAGAAATATACTGGTTGTTGCTGCACATTAAGATAGACTGCAAACTCCAGTGGTTTTTGCTCATTGCTGTATCGTGTATGATTATGCTCTTAAGTAATGATGATGAAACAAGGGACAATGCACCTGGAACTCCAACGGATCATCATCAAGATATTTATTCACCTGCACATGATACAACACCTTTAATGTACGGGAATGTTTTATCTTCTGGAAAACCATCAAAACTAGTAACACCCTTTTCAAAGCGGACAGATAGGTTTGCAGTGAAATTTAGCATCAACACCATGCCTGATGTAGAGAATGGAATGCAAGAACCTAATCATGAGAATGTTGAGAATGACGAGGATGATGTTATCAAGAAAGTTCTACCCCGTAAAAGGTGTTCATTGGTGGTTCATGGATCAGGGCCCAAACAAGGTTGCAGATTTATGTATGATAGGACAGAGGATAGGCTTAATGCAATAGAAAACCGAATTAAAAAGCATACAAGGGCACTTGTAGCCTCTGGGCTCTATGAAGAACCAACAGACCCTACAATTGCTTCCCAGGGCATTCATGTGCAGGCTAGCCTGTTGATTCATTTGAGTGTTGAGCATTCTGGAGGGGAATGTGTACGCCTAGACTTAGGACATTTAAGCCATTTTTCAGTTTTTCCTGGCCAGGTAGTAGGTATTGGAGGGCATAATCCTAGTGGGCATTGTTTGGTTGCATCTAAATTGGTGGATTCTATACCTATCTCTGTTGCTGATAAGGATTTGAATCCTGCAAAGAAGCAAGCTATTGATAAGGAGAATCAGCCAACTGATCTGCTTTGTGAACAGAGAGAGTTATCAATGATTATTGCAGCGGGCCCTTTTACTACAACAGACAATTTGTTGTTTGAGCCTCTTGTAGAACTGCTGGCATATGCAAAGCGAAGACCGCCACAGTTGCTTGTATTGCTGGGACCATTTATTGACTCTGAACACCCAGACATTAAGAAAGGAATCACGGAGAGGAGTTTTGATGAATTATTTCGTTTTGAAGTCCTAAGGAAGCCTGCATTGGATATCAGTCTACCTGATCTCAAATCTCAGATAGTCAGTCTCACTAATCCTGGAATCTTTGAGGCAAATGAGGTCAAAATTGGTTGCTGCACCGTGGATATTCTCAAGCAGGTCAGTGGAGAGGAGATATCACGAACTGCAGCAGATGGAAAACCTAGTGATCGCTTGAGTAGACTTGCAAACCATATTCTCAATCAACAAAGCTTCTATCCACTTTACCCACCGGCAGAAAGTGTTCCCTTGGACTTTTCTCTTGCTCCAGAAGCTCTTCAACTCTCATTGGTTCCAGATGTTCTTATCTTACCCTCAGACATCAAGTACTTTGTCAAGGTGCTTAATAGCGAAAGTGAAGGGATAAGCCCCATGAAATGCATTGCCGTCAATCCGGGAAGATTAGCCAAGGGAGAAGGAGGGGGTACTTTTGTAGAGCTTGATTTTGGTGGGGGTCCGGACAAGATTAACGCTTCAATTGTTGGCATATAA 1863 0.4187 MKEEIKSEFRKSGFDLDEEEEILNKCLTFCINYSLSPSDLVSSWEVYYLNRFVSSASVSVVTYGQNCPPKLLNGSTVQNAEMDGFLLHLQNNKKEDVIMEEAGLHTYSIRDAEIYWLLLHIKIDCKLQWFLLIAVSCMIMLLSNDDETRDNAPGTPTDHHQDIYSPAHDTTPLMYGNVLSSGKPSKLVTPFSKRTDRFAVKFSINTMPDVENGMQEPNHENVENDEDDVIKKVLPRKRCSLVVHGSGPKQGCRFMYDRTEDRLNAIENRIKKHTRALVASGLYEEPTDPTIASQGIHVQASLLIHLSVEHSGGECVRLDLGHLSHFSVFPGQVVGIGGHNPSGHCLVASKLVDSIPISVADKDLNPAKKQAIDKENQPTDLLCEQRELSMIIAAGPFTTTDNLLFEPLVELLAYAKRRPPQLLVLLGPFIDSEHPDIKKGITERSFDELFRFEVLRKPALDISLPDLKSQIVSLTNPGIFEANEVKIGCCTVDILKQVSGEEISRTAADGKPSDRLSRLANHILNQQSFYPLYPPAESVPLDFSLAPEALQLSLVPDVLILPSDIKYFVKVLNSESEGISPMKCIAVNPGRLAKGEGGGTFVELDFGGGPDKINASIVGI 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi368g00028 620 Coils Coil 256 276 - -
Sebi368g00028 620 Pfam DNA polymerase alpha/epsilon subunit B 391 453 IPR007185 GO:0003677|GO:0006260
Sebi368g00028 620 Pfam DNA polymerase alpha/epsilon subunit B 458 570 IPR007185 GO:0003677|GO:0006260
Sebi368g00028 620 Gene3D - 511 615 - -
Sebi368g00028 620 Gene3D - 370 457 - -
Sebi368g00028 620 PIRSF DNA_pol_alpha_2 453 608 IPR016722 -
Sebi368g00028 620 PIRSF DNA_pol_alpha_2 1 458 IPR016722 -
Sebi368g00028 620 Gene3D - 1 60 IPR043034 -
Sebi368g00028 620 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 456 IPR016722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi368g00028 Sebi-Chr368 860109 865264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi368g00028 3 620 Core DNA Replication Machinery Family AT1G67630 50.375 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi368g00028 K02321 - gmx:100795306 842.802