Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi368g00017 ATGGAACAACTCTTACTTCAGAAGGAATTACCAATACCATTACCATCCTCTTTGGAAGACGATGGAGAAACCTTCACAAATGCAAACATATGGAGCAAACTCACATTCCTATGGCTGAACCACATTTTTAAGAGAGGGAGAATTCAAAAACTTGAACTTCCTCATATTCCTTCTGTTCCTCATTCTGAAACAGCAGAGAATGCCTCCTCCATGTTGGAAGATTCAATTGGAAATCAGAAACTTGAAGGGGTTTCTTTGACCAAAGTTATTGTCCATTCTATCTGGAAATCCTTGGTCTTCAATGCAGTTTTTTCAGGTTATATCCCATCCATTGCAGCATTTGTTGTCACTGTTTTGGTTATGATATTCAATACACCTTTGGCCAATGTCCAAAAAAGTCTCCACTCTAAGATCATGGAAGCTAAGGATTCAAGAATCAAAATGACTTCAGAGACCTTGAAGAACATTAGAATTTTAAAAATGCATTCTTGGGAGTCCATTTTCTTGAAGAAACTTCTCCACCTAAGGAAAATGGAGAGGGGGTGGCTGCAGAAATACCTTTACACATGCTCAACAGTAGCCACTCTATTTTGGACATCTCCAACATTAGTTTCTGCTGTCACTTTTGGTGTCTGTTTACTGGTGAAAACAGAATTAACAGCAGCTACAGTTCTATCAGCTTTAGCAACTTTTCGTATTTTACAAGAACCAATCTACAACCTACCTGAGCTTATCTCCATTATAGCTCAAACAAGAGTATCGGTTGATCGAATCCAGGATTTCATCAACCAAGAGGATAAAACATTGTTTGTGATTAGTCATGCTTTAAAATCTTCTTCTGAAATTGCCATTGAAGTCAGGGCAAGTGAATATGCATGGGAAACAGATAAAAACCAGAAGAAACCAACAATTCAAATTACAGAAACTCTGAAGATAAAGAAGGGTCAAAAGGTTGCAATTTGTGGATTAGTAGGATCTGGAAAATCAAGCTTACTCTGCTGTATGCTTGGTGAGTTATCAAGGATTTCTGGGGAAGGAATGGAAATCAAGGGAAGTAGAAGTTATGTGCCCCAAAGTCCTTGGATTCAATCTGGGACTATAAGGGAAAATATTTTGTTTGGAAAGGAAATGAATAAGAACTTGTATGAGAAAGTTTTAGAAGGTTGTGCTTTGCACCAAGATATGAACATGTGGGTTGATGGAGATTTGACAATGGTGGGGGAGAGAGGCATAAACTTAAGTGGAGGACAAAAACAAAGGATTCAACTAGCAAGGGCTGTTTACAATAATTCAGATATTTATTTTCTGGATGATCCTTTCAGTGCTGTTGATGCACATACTGGAACACATTTGTTTAAGAAATGTCTAATGCAACTTCTATATGAGAAAACAGTTGTTTATGCTACCCATCAACTGGAATTCTTGGAAACAGCTGATCTTATTGTAGTGATGAAAGATGGAAAAATTGTAGAGGCAGGAAAGTATAAAGATTTGATAGAACTTCCCAATTCTGAACTTGTTGAACAAATGGCTGCTCATAAAGAAACATTGAAGCAAATAAATCCATGCAAAGATGATGATTCTGTGAGCTGTAGATCCTACCAAATAAATCAGATTGAAGGTACTGAAAAAAATCTTCCAAAGACTGTCAAAGATTGCAAGCTTTTGGAGAAAACCAATGAAGAGGAAGCAGAGAGTGGTCGAGTGAAATGGAATGTTTACTCATCCTTTGTTACATCAGCTTATAGAGGTGTACTTGTTCCCTTTGTTCTTCTGTGCCAAATTTTCTTTCAGGGATTGCAGATGGGAAGCAATTATTGGGTTGCTTGGGCCACAGAACAAAGGGGAAAGTCTTCTACGGATCAAAGTACAATAGACACAGACATACCATACAGATTAGCTGGACTTGTATTTGCACTTATCCAGTTGGTGAGTATCATTGTCCTAATGTCCCAGGTTGCATGGCAAGTCATTCTCCTATTTCTTGTTGTGCTTGCTATCTCCATCTGGTACCAGGCTTATTACATCACTAGTGCAAGGGAATTAGCCAGGATGGTAGGGATCCAAAAGGCTCCAATTTTGCATCACTTCTCAGAATCAGTTGCAGGAGCTGCCACAATTCGTTGTTTCAATCAAGAGCAAAGATTTTTGACTAAAGTTATGACTCTAATTGATGATTATTCTCGAGTAGCCTTTTACAATTATGCTACCATGGAATGGTTGTCTATCCGAATCAATTTTCTCTTTAATTTGGTCTTCTATTTTGTTCTCACCATCTTGGTTATTCTGCCAAGGTCTGCCATTGATCCTAGCTTGGCAGGATTGATTGCTACTTATGGTTTGAACCTAAATGTCCTACAGGCTTGGGTGATATGGAATCTTTGCAATGTTGAGAACAAAATGATCTCAGTTGAGAGAATATTACAGTTCACTAACATACCAAGTGAAGCACCCTTAATAATTCAAGATTCTAGGCCTGAGCCTGAGTGGCCTAGGGAGGGAAAGATTGAACTGCATAACCTTCATATACAGTATGATCCTGCTTCTCCTATGGTTCTCAAAGGTGTCACTTGCATCTTCCCAGGACAAAAGAAAATTGGAGTTGTAGGCAGGACAGGAAGTGGGAAATCCACCCTTGTTCAAGCTCTCTTTCGAGTGGTGGAGCCTTCTGCAGGATGGATACTTATTGATGGTATAGACATTTCAAATATTGGTCTGCAGGACCTAAGATCTAAGCTTGGTATAATTCCTCAAGATCCAACCTTGTTTCAAGGCACTGTGAGGACTAACTTGGATCCTCTAGAACAACATTCAGATCAAGAACTTTGGGAGGTTCTCAGTAAGTGCCATCTGTCAGAAATAGTAAGGCAGGATGCAAGGCTTCTTGATGCACCAGTGGCCGAAAATGGTGAAAATTGGAGTGTGGGGCAAAGGCAGTTGGTTTGCCTTGCTAGGCTGCTGTTAAAGAAAAGAAGAATTATGGTCTTAGATGAAGCAACTGCATCCATTGACACAACAACTGATAATTTAATTCAAAAGACTATTAGGGAAGAGACAAGTGGATGCACAGTCATTACCGTGGCACATAGAATTCCTACAGTTATTGATAATGACTTGGTTTTGGTCCTTGATCAAGGAAAAATCTTATACATAGTGCTACACAGGCACAAAACTGAGTCACACCACTCTATGATGTTCTCGCTGCTGTCTCTGGTATTCATGAATCATGATTAA 3234 0.3905 MEQLLLQKELPIPLPSSLEDDGETFTNANIWSKLTFLWLNHIFKRGRIQKLELPHIPSVPHSETAENASSMLEDSIGNQKLEGVSLTKVIVHSIWKSLVFNAVFSGYIPSIAAFVVTVLVMIFNTPLANVQKSLHSKIMEAKDSRIKMTSETLKNIRILKMHSWESIFLKKLLHLRKMERGWLQKYLYTCSTVATLFWTSPTLVSAVTFGVCLLVKTELTAATVLSALATFRILQEPIYNLPELISIIAQTRVSVDRIQDFINQEDKTLFVISHALKSSSEIAIEVRASEYAWETDKNQKKPTIQITETLKIKKGQKVAICGLVGSGKSSLLCCMLGELSRISGEGMEIKGSRSYVPQSPWIQSGTIRENILFGKEMNKNLYEKVLEGCALHQDMNMWVDGDLTMVGERGINLSGGQKQRIQLARAVYNNSDIYFLDDPFSAVDAHTGTHLFKKCLMQLLYEKTVVYATHQLEFLETADLIVVMKDGKIVEAGKYKDLIELPNSELVEQMAAHKETLKQINPCKDDDSVSCRSYQINQIEGTEKNLPKTVKDCKLLEKTNEEEAESGRVKWNVYSSFVTSAYRGVLVPFVLLCQIFFQGLQMGSNYWVAWATEQRGKSSTDQSTIDTDIPYRLAGLVFALIQLVSIIVLMSQVAWQVILLFLVVLAISIWYQAYYITSARELARMVGIQKAPILHHFSESVAGAATIRCFNQEQRFLTKVMTLIDDYSRVAFYNYATMEWLSIRINFLFNLVFYFVLTILVILPRSAIDPSLAGLIATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTNIPSEAPLIIQDSRPEPEWPREGKIELHNLHIQYDPASPMVLKGVTCIFPGQKKIGVVGRTGSGKSTLVQALFRVVEPSAGWILIDGIDISNIGLQDLRSKLGIIPQDPTLFQGTVRTNLDPLEQHSDQELWEVLSKCHLSEIVRQDARLLDAPVAENGENWSVGQRQLVCLARLLLKKRRIMVLDEATASIDTTTDNLIQKTIREETSGCTVITVAHRIPTVIDNDLVLVLDQGKILYIVLHRHKTESHHSMMFSLLSLVFMNHD 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi368g00017 1077 Gene3D - 820 1068 IPR027417 -
Sebi368g00017 1077 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 619 1056 - -
Sebi368g00017 1077 SMART AAA_5 314 488 IPR003593 GO:0016887
Sebi368g00017 1077 SMART AAA_5 862 1053 IPR003593 GO:0016887
Sebi368g00017 1077 Pfam ABC transporter 309 440 IPR003439 GO:0005524
Sebi368g00017 1077 SUPERFAMILY ABC transporter transmembrane region 618 816 IPR036640 GO:0005524|GO:0016020
Sebi368g00017 1077 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 619 799 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi368g00017 1077 CDD ABCC_MRP_domain1 284 488 - -
Sebi368g00017 1077 Gene3D ABC transporter type 1, transmembrane domain 84 268 IPR036640 GO:0005524|GO:0016020
Sebi368g00017 1077 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 110 250 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi368g00017 1077 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 836 1070 IPR003439 GO:0005524
Sebi368g00017 1077 FunFam Multidrug resistance-associated protein 4 271 528 - -
Sebi368g00017 1077 SUPERFAMILY ABC transporter transmembrane region 108 265 IPR036640 GO:0005524|GO:0016020
Sebi368g00017 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 501 IPR027417 -
Sebi368g00017 1077 CDD ABC_6TM_ABCC_D1 91 258 IPR044746 GO:0140359
Sebi368g00017 1077 FunFam Multidrug resistance-associated protein member 4 820 1071 - -
Sebi368g00017 1077 Pfam ABC transporter transmembrane region 619 761 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi368g00017 1077 Pfam ABC transporter transmembrane region 106 237 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi368g00017 1077 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 286 511 IPR003439 GO:0005524
Sebi368g00017 1077 Pfam ABC transporter 853 1001 IPR003439 GO:0005524
Sebi368g00017 1077 CDD ABC_6TM_ABCC_D2 619 811 IPR044726 GO:0140359
Sebi368g00017 1077 ProSitePatterns ABC transporters family signature. 413 427 IPR017871 GO:0005524|GO:0016887
Sebi368g00017 1077 Gene3D - 297 534 IPR027417 -
Sebi368g00017 1077 Gene3D ABC transporter type 1, transmembrane domain 617 819 IPR036640 GO:0005524|GO:0016020
Sebi368g00017 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 827 1050 IPR027417 -
Sebi368g00017 1077 CDD ABCC_MRP_domain2 834 1049 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi368g00017 Sebi-Chr368 710323 716191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi368g00017 301 530 Calmodulin-binding Proteins AT2G36910 29.412 1.01e-20 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi368g00017 - - qsa:O6P43_023894 1291.56