Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi368g00002 ATGTTGTGTTGTTTAGGAGAATTTGAAATGAAAGAAGAGGTGCTACAGATTCCTTATTGCAAGCATGTGTTCCACATCGACTGCATACATCACTGGCTGCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACCAAGTTCCTCAATCCAGCACCGCCTATTAATATTATATCAGACCCACACCAGCAACAAGGACAAGGTGGTGCTATCATTTCACACCTTCCATTACAAATCTTATCATTGCCACCTCAAACAGATCAGAATGAACCTGCTGCTGCTGCTTCCATAATTTTCTCAAGGGAATGA 321 0.4206 MLCCLGEFEMKEEVLQIPYCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTTKFLNPAPPINIISDPHQQQGQGGAIISHLPLQILSLPPQTDQNEPAAAASIIFSRE 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi368g00002 106 ProSiteProfiles Zinc finger RING-type profile. 4 43 IPR001841 -
Sebi368g00002 106 Pfam Ring finger domain 3 43 IPR001841 -
Sebi368g00002 106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 50 IPR013083 -
Sebi368g00002 106 PANTHER RING-H2 FINGER PROTEIN ATL16 3 65 IPR044600 GO:0016567|GO:0016740
Sebi368g00002 106 SUPERFAMILY RING/U-box 3 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi368g00002 Sebi-Chr368 10971 11291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi368g00002 4 68 C3H Transcription Factor Family AT1G33480 41.538 5.19e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi368g00002 K19039 - gmx:100813129 161.384